ENSDARG00000089078


Danio rerio

Features
Gene ID: ENSDARG00000089078
  
Biological name :si:ch211-160j14.3
  
Synonyms : si:ch211-160j14.3
  
Possible biological names infered from orthology : COL23A1 / Collagen alpha-1(XXIII) chain / collagen type XXIII alpha 1 chain / Q86Y22 / Q8K4G2
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 32089491
Gene end: 32119965
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000145291
Ensembl peptide - ENSDARP00000110199
Ensembl peptide - ENSDARP00000114593
Ensembl peptide - ENSDARP00000149308
swissprot - F1QE77
swissprot - E7FCI4
ZFIN ID - ZDB-GENE-091204-86
Ensembl - ENSDARG00000089078
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL23A1ENSGALG00000006708Gallus gallus
 Q86Y22ENSG00000050767Homo sapiens
 Q8K4G2ENSMUSG00000063564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533953
col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*ENSDARG0000002449236
col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000003148336
col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSDARG0000003784534
col9a1a / collagen, type IX, alpha 1a / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000007369933
zgc:113232ENSDARG0000004011831


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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