ENSDARG00000031483


Danio rerio

Features
Gene ID: ENSDARG00000031483
  
Biological name :col9a1b
  
Synonyms : col9a1b / collagen, type IX, alpha 1b
  
Possible biological names infered from orthology : COL9A1 / collagen type IX alpha 1 chain / P20849
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 39119460
Gene end: 39160018
  
Corresponding Affymetrix probe sets: Dr.371.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121882
Ensembl peptide - ENSDARP00000133366
NCBI entrez gene - 406548     See in Manteia.
RefSeq - NM_213264
RefSeq Peptide - NP_998429
swissprot - B8A4T6
swissprot - A0A0R4II70
ZFIN ID - ZDB-GENE-040426-2410
Ensembl - ENSDARG00000031483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL9A1ENSGALG00000015970Gallus gallus
 COL9A1ENSG00000112280Homo sapiens
 Col9a1ENSMUSG00000026147Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col9a1a / collagen, type IX, alpha 1a / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000007369965
col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*ENSDARG0000002449250
col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSDARG0000003784547
zgc:113232ENSDARG0000004011831
si:ch211-160j14.3 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000008907822
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533922


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000024492 col9a2 / procollagen, type IX, alpha 2 / Q14055* / collagen type IX alpha 2 chain*  / complex
 ENSDARG00000037845 col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr