ENSG00000198467


Homo sapiens

Features
Gene ID: ENSG00000198467
  
Biological name :TPM2
  
Synonyms : P07951 / TPM2 / tropomyosin 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p13.3
Gene start: 35681992
Gene end: 35690121
  
Corresponding Affymetrix probe sets: 204083_s_at (Human Genome U133 Plus 2.0 Array)   212654_at (Human Genome U133 Plus 2.0 Array)   227397_at (Human Genome U133 Plus 2.0 Array)   229911_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495440
Ensembl peptide - ENSP00000495075
Ensembl peptide - ENSP00000496494
Ensembl peptide - ENSP00000354219
Ensembl peptide - ENSP00000367541
Ensembl peptide - ENSP00000367542
Ensembl peptide - ENSP00000367550
Ensembl peptide - ENSP00000475952
NCBI entrez gene - 7169     See in Manteia.
OMIM - 190990
RefSeq - XM_017015093
RefSeq - NM_001301226
RefSeq - NM_001301227
RefSeq - NM_003289
RefSeq - NM_213674
RefSeq - XM_017015087
RefSeq - XM_017015088
RefSeq - XM_017015089
RefSeq - XM_017015090
RefSeq - XM_017015091
RefSeq - XM_017015092
RefSeq Peptide - NP_003280
RefSeq Peptide - NP_998839
RefSeq Peptide - NP_001288155
RefSeq Peptide - NP_001288156
swissprot - P07951
swissprot - Q5TCU8
swissprot - Q5TCU3
swissprot - U3KQK2
swissprot - V9HW25
swissprot - A7XZE4
Ensembl - ENSG00000198467
  
Related genetic diseases (OMIM): 108120 - Arthrogryposis multiplex congenita, distal, type 1, 108120
  601680 - Arthrogryposis, distal, type 2B, 601680
  609285 - CAP myopathy 2, 609285
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPM2ENSGALG00000025842Gallus gallus
 Tpm2ENSMUSG00000028464Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TPM3 / P06753 / tropomyosin 3ENSG0000014354986
TPM4 / P67936 / tropomyosin 4ENSG0000016746081
TPM1 / P09493 / tropomyosin 1ENSG0000014041676


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0030049 muscle filament sliding TAS
 biological_processGO:0043462 regulation of ATPase activity IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005862 muscle thin filament tropomyosin TAS
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0015629 actin cytoskeleton ISS
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0008307 structural constituent of muscle TAS
 molecular_functionGO:0042802 identical protein binding ISS
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046982 protein heterodimerization activity ISS
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000211 Trismus "Limitation in the ability to open the mouth." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000325 Triangular facies 
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000467 Neck muscle weakness 
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000598 Abnormality of the ears 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001032 Aplasia of the distal interphalangeal creases "Absence of the distal interphalangeal flexion creases of the fingers." [HPO:curators]
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 HP:0001181 Adducted thumbs 
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 HP:0001188 Clenched hands 
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 HP:0001193 Ulnar deviation of the hand or of fingers of the hand 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001315 Reduced reflexes 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001612 Weak cry 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001838 Vertical talus 
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 HP:0001840 Metatarsus varus "Metatarsus varus (adductus) is one of the most common foot deformities, that is defined as a transverse plane deformity in Lisfranc s (tarsometatarsal) joints in which the metatarsals are deviated medially. The relationship between talus and calcaneus is normal. On inspection the toes angle abruptly towards the midline, creating a C-shaped lateral foot border with a prominent styloid process of the 5th metatarsal. The result is that the forefoot is twisted inwards relative to the heel, so that the sole faces the midline." [HPO:curators]
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 HP:0001848 Calcaneovalgus deformities 
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 HP:0001883 Talipes 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002058 Myopathic facies "A facial appearance characteristic of myopathic conditions. The face appears expressionless with sunken cheeks, bilateral ptosis, and inability to elevate the corners of the mouth, due to muscle weakness." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002355 Difficulty walking 
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002751 Kyphoscoliosis 
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 HP:0002792 Reduced vital capacity 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002987 Elbow contractures 
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 HP:0003049 Ulnar deviation of the wrist 
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 HP:0003121 Limb contractures 
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 HP:0003184 Decreased hip abduction 
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0003273 Hip contractures 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003422 Vertebral segmentation defects 
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 HP:0003577 Onset at birth 
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 HP:0003687 Centralized nuclei 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0003691 Scapular winging 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003755 Type 1 fibers are at least 12% smaller than type 2 fibers "The presence of abnormal muscle fiber size such that type 1 fibers are at least 12% smaller than type 2 fibers (in general, this feature can only be observed on muscle biopsy)." [HPO:curators]
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 HP:0003798 Nemaline bodies "Nemaline rods are abnormal bodies are abnormal that can occur in skeletal muscle fibers. THe rods can be observed on histological analysis of muscle biopsy tissue or upon electron microscopy, where they appear either as extensions of sarcomeric Z-lines, in random array without obvious attachment to Z-lines (often in areas devoid of sarcomeres) or in large clusters localized at the sarcolemma or intermyofibrillar spaces." [HPO:curators, pmid:11333380]
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 HP:0003803 Type 1 muscle fiber predominance "An abnormal predominance of type I muscle fibers (in general, this feature can only be observed on muscle biopsy)." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005272 Prominent nasolabial folds 
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 HP:0005684 Distal arthrogryposis 
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 HP:0006109 Aplasia of the interphalangeal creases "Absence of the interphalangeal creases of the fingers." [HPO:curators]
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 HP:0006380 Knee flexion deformities 
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008368 Synostosis involving tarsal bones 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009742 Stiff shoulders "Shoulder joint stiffness is a perceived sensation of tightness in shoulders when attempting to move them after a period of inactivity." [HPO:curators]
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 HP:0010557 Overlapping fingers "Overlapping of the fingers occuring as the result of a deviation of the fingers from their normal position." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100830 Round ear 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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