ENSG00000143549


Homo sapiens

Features
Gene ID: ENSG00000143549
  
Biological name :TPM3
  
Synonyms : P06753 / TPM3 / tropomyosin 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q21.3
Gene start: 154155304
Gene end: 154194648
  
Corresponding Affymetrix probe sets: 214365_at (Human Genome U133 Plus 2.0 Array)   222976_s_at (Human Genome U133 Plus 2.0 Array)   224164_at (Human Genome U133 Plus 2.0 Array)   238065_at (Human Genome U133 Plus 2.0 Array)   238079_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357518
Ensembl peptide - ENSP00000357517
Ensembl peptide - ENSP00000357520
Ensembl peptide - ENSP00000480520
Ensembl peptide - ENSP00000426521
Ensembl peptide - ENSP00000426306
Ensembl peptide - ENSP00000422207
Ensembl peptide - ENSP00000357521
Ensembl peptide - ENSP00000271850
Ensembl peptide - ENSP00000307712
Ensembl peptide - ENSP00000339035
Ensembl peptide - ENSP00000339378
Ensembl peptide - ENSP00000341653
Ensembl peptide - ENSP00000357516
NCBI entrez gene - 7170     See in Manteia.
OMIM - 191030
RefSeq - NM_001278189
RefSeq - NM_001043351
RefSeq - NM_001043352
RefSeq - NM_001043353
RefSeq - NM_001278188
RefSeq - NM_001278190
RefSeq - NM_001278191
RefSeq - NM_152263
RefSeq - NM_153649
RefSeq Peptide - NP_001265119
RefSeq Peptide - NP_689476
RefSeq Peptide - NP_705935
RefSeq Peptide - NP_001036816
RefSeq Peptide - NP_001036817
RefSeq Peptide - NP_001036818
RefSeq Peptide - NP_001265117
RefSeq Peptide - NP_001265118
RefSeq Peptide - NP_001265120
swissprot - A0A0S2Z4G4
swissprot - J3KN67
swissprot - D6RGJ6
swissprot - A0A087WWU8
swissprot - D6RFM2
swissprot - P06753
swissprot - Q5HYB6
swissprot - Q5VU61
swissprot - D6R904
swissprot - A0A0S2Z4I4
Ensembl - ENSG00000143549
  
Related genetic diseases (OMIM): 255310 - Myopathy, congenital, with fiber-type disproportion, 255310
  609284 - CAP myopathy 1, 609284
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tpm3ENSDARG00000005162Danio rerio
 TPM3ENSGALG00000013537Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TPM2 / P07951 / tropomyosin 2ENSG0000019846786
TPM4 / P67936 / tropomyosin 4ENSG0000016746080
TPM1 / P09493 / tropomyosin 1ENSG0000014041678


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0030049 muscle filament sliding TAS
 cellular_componentGO:0001725 stress fiber IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton TAS
 cellular_componentGO:0005862 muscle thin filament tropomyosin TAS
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000467 Neck muscle weakness 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001315 Reduced reflexes 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001612 Weak cry 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0003121 Limb contractures 
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 HP:0003198 Myopathy 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0003621 Juvenile onset 
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 HP:0003687 Centralized nuclei 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0003755 Type 1 fibers are at least 12% smaller than type 2 fibers "The presence of abnormal muscle fiber size such that type 1 fibers are at least 12% smaller than type 2 fibers (in general, this feature can only be observed on muscle biopsy)." [HPO:curators]
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 HP:0003798 Nemaline bodies "Nemaline rods are abnormal bodies are abnormal that can occur in skeletal muscle fibers. THe rods can be observed on histological analysis of muscle biopsy tissue or upon electron microscopy, where they appear either as extensions of sarcomeric Z-lines, in random array without obvious attachment to Z-lines (often in areas devoid of sarcomeres) or in large clusters localized at the sarcolemma or intermyofibrillar spaces." [HPO:curators, pmid:11333380]
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 HP:0003828 Variable expressivity 
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 HP:0008944 Distal lower limb muscle weakness and atrophy "Amyotrophy of distal lower leg muscles with resultant weakness." [HPO:curators]
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 HP:0009053 Muscle weakness, lower limb, distal "Weakness of the distal muscles of the legs." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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