ENSGALG00000013537


Gallus gallus

Features
Gene ID: ENSGALG00000013537
  
Biological name :TPM3
  
Synonyms : Gallus gallus tropomyosin 3 (TPM3), transcript variant 3, mRNA. / TPM3
  
Possible biological names infered from orthology : P06753 / tropomyosin 3
  
Species: Gallus gallus
  
Chr. number: 25
Strand: -1
Band:
Gene start: 2103501
Gene end: 2119591
  
Corresponding Affymetrix probe sets: Gga.18839.1.A1_at (Chicken Array)   Gga.18839.1.S1_at (Chicken Array)   Gga.18919.1.S1_a_at (Chicken Array)   Gga.4372.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046814
Ensembl peptide - ENSGALP00000049311
Ensembl peptide - ENSGALP00000062963
Ensembl peptide - ENSGALP00000060194
Ensembl peptide - ENSGALP00000059077
Ensembl peptide - ENSGALP00000058609
Ensembl peptide - ENSGALP00000056816
Ensembl peptide - ENSGALP00000022004
Ensembl peptide - ENSGALP00000039896
Ensembl peptide - ENSGALP00000044584
NCBI entrez gene - 770103     See in Manteia.
RefSeq - XM_015298585
RefSeq - XM_015298569
RefSeq - XM_015298570
RefSeq - XM_015298571
RefSeq - XM_015298572
RefSeq - XM_015298574
RefSeq - XM_015298575
RefSeq - XM_015298576
RefSeq - XM_015298577
RefSeq - XM_015298578
RefSeq - XM_015298579
RefSeq - XM_015298580
RefSeq - XM_015298581
RefSeq - XM_015298582
RefSeq - XM_015298583
RefSeq - NM_001245927
RefSeq - NM_001352039
RefSeq - NM_001352040
RefSeq - XM_015298565
RefSeq - XM_015298566
RefSeq - XM_015298567
RefSeq - XM_015298568
RefSeq Peptide - NP_001338970
RefSeq Peptide - NP_001338971
RefSeq Peptide - NP_001232856
RefSeq Peptide - NP_001338968
RefSeq Peptide - NP_001338969
swissprot - H9L074
swissprot - H9L3K0
swissprot - A0A1L1RVU7
swissprot - Q5ZLJ7
swissprot - A0A1D5P2B9
swissprot - A0A1L1RN57
swissprot - A0A1L1RJZ6
swissprot - A0A1L1RIN9
swissprot - A0A1D5P9B0
Ensembl - ENSGALG00000013537
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tpm3ENSDARG00000005162Danio rerio
 TPM3ENSG00000143549Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TPM1 / P04268 / Tropomyosin alpha-1 chain / P09493* / P58771* / tropomyosin 1* / tropomyosin 1, alpha*ENSGALG0000000352174
TPM2 / P19352 / Tropomyosin beta chain / P58774* / P07951* / tropomyosin 2* / tropomyosin 2, beta*ENSGALG0000002584269
TPM4 / tropomyosin 4 / P67936* / Q6IRU2* / Tropomyosin alpha-4 chain *ENSGALG0000000256351


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin
 IPR010307  Laminin domain II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0008017 microtubule binding ISS
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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