ENSGALG00000002563


Gallus gallus

Features
Gene ID: ENSGALG00000002563
  
Biological name :TPM4
  
Synonyms : TPM4 / tropomyosin 4
  
Possible biological names infered from orthology : P67936 / Q6IRU2 / Tropomyosin alpha-4 chain
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 4446782
Gene end: 4454984
  
Corresponding Affymetrix probe sets: Gga.3702.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038490
Ensembl peptide - ENSGALP00000060763
Ensembl peptide - ENSGALP00000055434
Ensembl peptide - ENSGALP00000055421
Ensembl peptide - ENSGALP00000048496
Ensembl peptide - ENSGALP00000044612
Ensembl peptide - ENSGALP00000043500
NCBI entrez gene - 107055375     See in Manteia.
RefSeq - XM_015300190
RefSeq - XM_015300191
RefSeq - XM_015300192
RefSeq - XM_015300193
swissprot - A0A1D5NW76
swissprot - A0A1L1RPQ6
swissprot - F1NK75
swissprot - A0A1D5NT47
swissprot - A0A1D5PRB1
swissprot - A0A1D5PR98
swissprot - A0A1D5P713
Ensembl - ENSGALG00000002563
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tpm4bENSDARG00000019128Danio rerio
 TPM4ENSG00000167460Homo sapiens
 Tpm4ENSMUSG00000031799Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TPM1 / P04268 / Tropomyosin alpha-1 chain / P09493* / P58771* / tropomyosin 1* / tropomyosin 1, alpha*ENSGALG0000000352154
TPM3 / Gallus gallus tropomyosin 3 (TPM3), transcript variant 3, mRNA. / P06753* / tropomyosin 3*ENSGALG0000001353754
TPM2 / P19352 / Tropomyosin beta chain / P58774* / P07951* / tropomyosin 2* / tropomyosin 2, beta*ENSGALG0000002584254


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0002102 podosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0030863 cortical cytoskeleton IEA
 cellular_componentGO:0031941 filamentous actin IEA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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