ENSDARG00000019128


Danio rerio

Features
Gene ID: ENSDARG00000019128
  
Biological name :tpm4b
  
Synonyms : tpm4b / tropomyosin 4b
  
Possible biological names infered from orthology : P67936 / Q6IRU2 / TPM4 / tropomyosin 4 / Tropomyosin alpha-4 chain
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 55300425
Gene end: 55337585
  
Corresponding Affymetrix probe sets: Dr.4580.1.A1_at (Zebrafish Array)   Dr.4580.2.S1_at (Zebrafish Array)   NM_199675_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000137812
Ensembl peptide - ENSDARP00000143569
Ensembl peptide - ENSDARP00000088646
NCBI entrez gene - 324244     See in Manteia.
RefSeq - NM_199675
RefSeq Peptide - NP_955969
swissprot - A0A286Y9C2
swissprot - Q7SXW1
ZFIN ID - ZDB-GENE-030131-2964
Ensembl - ENSDARG00000019128
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPM4ENSGALG00000002563Gallus gallus
 TPM4ENSG00000167460Homo sapiens
 Tpm4ENSMUSG00000031799Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tpm4a / tropomyosin 4a / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000002396379
tpm3 / tropomyosin 3 / P21107* / P06753* / Tpm3-rs7* / tropomyosin 3, gamma*ENSDARG0000000516275
zgc:171719 / TPM1 (1 of many) / TPM1* / P09493* / tropomyosin 1*ENSDARG0000008740273
tpm2 / tropomyosin 2 (beta)ENSDARG0000010468272
tpma / P13104 / alpha-tropomyosin / TPM1* / P58771* / P09493* / tropomyosin 1* / tropomyosin 1, alpha*ENSDARG0000003368372


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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