ENSDARG00000033683


Danio rerio

Features
Gene ID: ENSDARG00000033683
  
Biological name :tpma
  
Synonyms : alpha-tropomyosin / P13104 / tpma
  
Possible biological names infered from orthology : P09493 / P58771 / TPM1 / tropomyosin 1 / tropomyosin 1, alpha
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 29951997
Gene end: 29962080
  
Corresponding Affymetrix probe sets: Dr.20815.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000039656
Ensembl peptide - ENSDARP00000142967
Ensembl peptide - ENSDARP00000142952
Ensembl peptide - ENSDARP00000142950
Ensembl peptide - ENSDARP00000142833
Ensembl peptide - ENSDARP00000142778
Ensembl peptide - ENSDARP00000142776
Ensembl peptide - ENSDARP00000142761
Ensembl peptide - ENSDARP00000142715
Ensembl peptide - ENSDARP00000142649
NCBI entrez gene - 30324     See in Manteia.
swissprot - A0A1I7Q3W7
swissprot - A0A1D5NSY1
swissprot - A0A1D5NSX9
swissprot - A0A1D5NSL6
swissprot - A0A1D5NSG3
swissprot - A0A1D5NSG1
swissprot - A0A1D5NSE7
swissprot - A0A1D5NSA5
swissprot - A0A1D5NS40
swissprot - P13104
ZFIN ID - ZDB-GENE-990415-269
Ensembl - ENSDARG00000033683
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPM1ENSGALG00000003521Gallus gallus
 TPM1ENSG00000140416Homo sapiens
 Tpm1ENSMUSG00000032366Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:171719 / TPM1 (1 of many) / TPM1* / P09493* / tropomyosin 1*ENSDARG0000008740296
tpm2 / tropomyosin 2 (beta)ENSDARG0000010468287
tpm3 / tropomyosin 3 / P21107* / P06753* / Tpm3-rs7* / tropomyosin 3, gamma*ENSDARG0000000516285
tpm4a / tropomyosin 4a / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000002396382
tpm4b / tropomyosin 4b / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000001912863


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007015 actin filament organization IBA
 biological_processGO:0060048 cardiac muscle contraction IBA
 biological_processGO:0061515 myeloid cell development IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0015629 actin cytoskeleton ISS
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0042802 identical protein binding ISS
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046982 protein heterodimerization activity ISS
 molecular_functionGO:0051015 actin filament binding ISS


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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