ENSDARG00000005162


Danio rerio

Features
Gene ID: ENSDARG00000005162
  
Biological name :tpm3
  
Synonyms : tpm3 / tropomyosin 3
  
Possible biological names infered from orthology : P06753 / P21107 / Tpm3-rs7 / tropomyosin 3, gamma
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 10985369
Gene end: 11031394
  
Corresponding Affymetrix probe sets: Dr.18559.1.S1_at (Zebrafish Array)   Dr.20297.1.S1_at (Zebrafish Array)   NM_205676_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000149575
Ensembl peptide - ENSDARP00000151109
Ensembl peptide - ENSDARP00000004352
Ensembl peptide - ENSDARP00000012717
Ensembl peptide - ENSDARP00000113122
Ensembl peptide - ENSDARP00000125941
NCBI entrez gene - 373076     See in Manteia.
RefSeq - NM_205676
RefSeq - XM_005159374
RefSeq Peptide - NP_991239
swissprot - Q803M1
swissprot - A5WW36
swissprot - I3ISQ1
swissprot - Q6P0W3
ZFIN ID - ZDB-GENE-030826-16
Ensembl - ENSDARG00000005162
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPM3ENSGALG00000013537Gallus gallus
 TPM3ENSG00000143549Homo sapiens
 Tpm3ENSMUSG00000027940Mus musculus
 Tpm3-rs7ENSMUSG00000058126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tpm4a / tropomyosin 4a / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000002396385
tpma / P13104 / alpha-tropomyosin / TPM1* / P58771* / P09493* / tropomyosin 1* / tropomyosin 1, alpha*ENSDARG0000003368385
zgc:171719 / TPM1 (1 of many) / TPM1* / P09493* / tropomyosin 1*ENSDARG0000008740285
tpm2 / tropomyosin 2 (beta)ENSDARG0000010468281
tpm4b / tropomyosin 4b / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000001912865


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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