ENSMUSG00000027940


Mus musculus

Features
Gene ID: ENSMUSG00000027940
  
Biological name :Tpm3
  
Synonyms : P21107 / Tpm3 / tropomyosin 3, gamma
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F1
Gene start: 90072649
Gene end: 90100902
  
Corresponding Affymetrix probe sets: 10416940 (MoGene1.0st)   10493633 (MoGene1.0st)   1427260_a_at (Mouse Genome 430 2.0 Array)   1427567_a_at (Mouse Genome 430 2.0 Array)   1436958_x_at (Mouse Genome 430 2.0 Array)   1449996_a_at (Mouse Genome 430 2.0 Array)   1449997_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000113056
Ensembl peptide - ENSMUSP00000029549
Ensembl peptide - ENSMUSP00000113219
Ensembl peptide - ENSMUSP00000115565
Ensembl peptide - ENSMUSP00000114229
Ensembl peptide - ENSMUSP00000113978
Ensembl peptide - ENSMUSP00000113578
NCBI entrez gene - 59069     See in Manteia.
MGI - MGI:1890149
RefSeq - XM_017319678
RefSeq - NM_001253738
RefSeq - NM_001253740
RefSeq - NM_001271764
RefSeq - NM_001293748
RefSeq - NM_001293749
RefSeq - NM_001357581
RefSeq - NM_022314
RefSeq - XM_006501835
RefSeq - XM_006501836
RefSeq - XM_006501838
RefSeq - XM_006501839
RefSeq - XM_006501841
RefSeq - XM_017319677
RefSeq Peptide - NP_001240667
RefSeq Peptide - NP_001258693
RefSeq Peptide - NP_001280677
RefSeq Peptide - NP_001280678
RefSeq Peptide - NP_001344510
RefSeq Peptide - NP_071709
RefSeq Peptide - NP_001240669
swissprot - A0A0R4J1P2
swissprot - P21107
swissprot - Q58E70
swissprot - E9Q7Q3
swissprot - E9Q5J9
swissprot - D3Z6I8
swissprot - D3YVR0
swissprot - A0A1C7ZMY7
Ensembl - ENSMUSG00000027940
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tpm3ENSDARG00000005162Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tpm1 / P58771 / tropomyosin 1, alpha / P09493* / tropomyosin 1*ENSMUSG0000003236679
Tpm3-rs7ENSMUSG0000005812677
Tpm2 / P58774 / tropomyosin 2, beta / P07951* / tropomyosin 2*ENSMUSG0000002846473
Tpm4 / Q6IRU2 / Tropomyosin alpha-4 chain / P67936* / tropomyosin 4*ENSMUSG0000003179958


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0001725 stress fiber ISO
 cellular_componentGO:0002102 podosome IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0015629 actin cytoskeleton ISO
 cellular_componentGO:0030426 growth cone IDA
 cellular_componentGO:0030863 cortical cytoskeleton IDA
 cellular_componentGO:0031941 filamentous actin IDA
 cellular_componentGO:0032154 cleavage furrow IDA
 cellular_componentGO:0043005 neuron projection IDA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002108 abnormal muscle morphology "abnormal development of muscle tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: EdaTa-43H/Y
Genetic Background: involves: 101/H * C3H/HeH * STOCK Myo15sh2/J

 MP:0005620 abnormal muscle contractility "aberrant ability of a muscle to shorten or to develop increased tension" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: EdaTa-43H/Y
Genetic Background: involves: 101/H * C3H/HeH * STOCK Myo15sh2/J

Allelic Composition: Tpm3tm4.1Pgun/Tpm3tm4.1Pgun
Genetic Background: B6JArc.Cg-Tpm3tm4.1Pgun

 MP:0011094 complete embryonic lethality before implantation "death of all organisms of a given genotype in a population between fertilization and implantation (Mus: E0 to less than E4.5)" [MGI:csmith]
Show

Allelic Composition: Arnttm1Bra/Arnttm1Bra
Genetic Background: B6.129-Arnttm1Bra

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr