ENSDARG00000087402


Danio rerio

Features
Gene ID: ENSDARG00000087402
  
Biological name :TPM1 (1 of many)
  
Synonyms : TPM1 (1 of many) / zgc:171719
  
Possible biological names infered from orthology : P09493 / P58771 / TPM1 / tropomyosin 1 / tropomyosin 1, alpha
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 33192404
Gene end: 33250323
  
Corresponding Affymetrix probe sets: Dr.20716.1.A1_at (Zebrafish Array)   Dr.20716.2.A1_at (Zebrafish Array)   NM_200934_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150453
Ensembl peptide - ENSDARP00000002483
Ensembl peptide - ENSDARP00000151393
Ensembl peptide - ENSDARP00000155971
Ensembl peptide - ENSDARP00000108795
Ensembl peptide - ENSDARP00000111203
Ensembl peptide - ENSDARP00000112368
NCBI entrez gene - 393908     See in Manteia.
RefSeq - NM_001293168
RefSeq - NM_001102629
RefSeq - NM_200934
RefSeq Peptide - NP_001096099
RefSeq Peptide - NP_957228
RefSeq Peptide - NP_001280097
swissprot - F6NVA3
swissprot - A7E2K1
swissprot - E7FBZ3
swissprot - F6P435
swissprot - Q6NYQ0
swissprot - Q7ZVK9
ZFIN ID - ZDB-GENE-070822-17
Ensembl - ENSDARG00000087402
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPM1ENSGALG00000003521Gallus gallus
 TPM1ENSG00000140416Homo sapiens
 Tpm1ENSMUSG00000032366Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tpma / P13104 / alpha-tropomyosin / TPM1* / P58771* / P09493* / tropomyosin 1* / tropomyosin 1, alpha*ENSDARG0000003368396
tpm2 / tropomyosin 2 (beta)ENSDARG0000010468288
tpm3 / tropomyosin 3 / P21107* / P06753* / Tpm3-rs7* / tropomyosin 3, gamma*ENSDARG0000000516285
tpm4a / tropomyosin 4a / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000002396382
tpm4b / tropomyosin 4b / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000001912863


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005884 actin filament IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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