ENSDARG00000104682


Danio rerio

Features
Gene ID: ENSDARG00000104682
  
Biological name :tpm2
  
Synonyms : tpm2 / tropomyosin 2 (beta)
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 6318227
Gene end: 6375394
  
Corresponding Affymetrix probe sets: Dr.14031.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131208
Ensembl peptide - ENSDARP00000137941
Ensembl peptide - ENSDARP00000136615
Ensembl peptide - ENSDARP00000136122
Ensembl peptide - ENSDARP00000132881
NCBI entrez gene - 415209     See in Manteia.
RefSeq - NM_001002119
RefSeq - XM_005155493
RefSeq - XM_005155494
RefSeq - XM_005155497
RefSeq Peptide - NP_001002119
swissprot - A0A0R4INL7
swissprot - A0A0R4IMN8
swissprot - A0A0R4IM99
swissprot - A0A0R4IAL5
swissprot - Q6IQD7
ZFIN ID - ZDB-GENE-040625-114
Ensembl - ENSDARG00000104682
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:171719 / TPM1 (1 of many) / TPM1* / P09493* / tropomyosin 1*ENSDARG0000008740288
tpma / P13104 / alpha-tropomyosin / TPM1* / P58771* / P09493* / tropomyosin 1* / tropomyosin 1, alpha*ENSDARG0000003368387
tpm4a / tropomyosin 4a / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000002396383
tpm3 / tropomyosin 3 / P21107* / P06753* / Tpm3-rs7* / tropomyosin 3, gamma*ENSDARG0000000516281
tpm4b / tropomyosin 4b / TPM4* / Q6IRU2* / P67936* / tropomyosin 4* / Tropomyosin alpha-4 chain *ENSDARG0000001912863


Protein motifs (from Interpro)
Interpro ID Name
 IPR000533  Tropomyosin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IBA
 biological_processGO:0007015 actin filament organization IBA
 cellular_componentGO:0005862 muscle thin filament tropomyosin IBA
 cellular_componentGO:0005865 striated muscle thin filament IDA
 cellular_componentGO:0005884 actin filament IBA
 molecular_functionGO:0008307 structural constituent of muscle IBA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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