ENSG00000214717


Homo sapiens

Features
Gene ID: ENSG00000214717
  
Biological name :ZBED1
  
Synonyms : O96006 / ZBED1 / zinc finger BED-type containing 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p22.33
Gene start: 2486414
Gene end: 2500967
  
Corresponding Affymetrix probe sets: 1554821_a_at (Human Genome U133 Plus 2.0 Array)   203043_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370620
Ensembl peptide - ENSP00000419148
Ensembl peptide - ENSP00000370621
Ensembl peptide - ENSP00000370616
NCBI entrez gene - 9189     See in Manteia.
OMIM - 300178
RefSeq - NM_001171135
RefSeq - NM_001171136
RefSeq - NM_004729
RefSeq Peptide - NP_001164607
RefSeq Peptide - NP_004720
RefSeq Peptide - NP_001164606
swissprot - O96006
swissprot - A0A024RBU4
swissprot - C9JXP4
Ensembl - ENSG00000214717
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZBED4 / O75132 / zinc finger BED-type containing 4ENSG0000010042620
ZBED6 / P86452 / zinc finger BED-type containing 6ENSG0000025731517


Protein motifs (from Interpro)
Interpro ID Name
 IPR003656  Zinc finger, BED-type
 IPR008906  HAT, C-terminal dimerisation domain
 IPR012337  Ribonuclease H-like superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0016925 protein sumoylation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0000228 nuclear chromosome TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0004803 transposase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019789 SUMO transferase activity EXP
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
SUMOylation of chromatin organization proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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