ENSG00000244486


Homo sapiens

Features
Gene ID: ENSG00000244486
  
Biological name :SCARF2
  
Synonyms : Q96GP6 / SCARF2 / scavenger receptor class F member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q11.21
Gene start: 20424815
Gene end: 20437826
  
Corresponding Affymetrix probe sets: 227557_at (Human Genome U133 Plus 2.0 Array)   239454_at (Human Genome U133 Plus 2.0 Array)   241691_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485276
Ensembl peptide - ENSP00000477564
NCBI entrez gene - 91179     See in Manteia.
OMIM - 613619
RefSeq - XM_017029065
RefSeq - NM_153334
RefSeq - NM_182895
RefSeq Peptide - NP_699165
RefSeq Peptide - NP_878315
swissprot - Q96GP6
swissprot - A0A096LNX8
Ensembl - ENSG00000244486
  
Related genetic diseases (OMIM): 600920 - Van den Ende-Gupta syndrome, 600920
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01077124.1ENSDARG00000114825Danio rerio
 SCARF2ENSGALG00000034560Gallus gallus
 P59222ENSMUSG00000012017Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q14162 / SCARF1 / scavenger receptor class F member 1ENSG0000007466037
MEGF10 / Q96KG7 / multiple EGF like domains 10ENSG0000014579423
PEAR1 / Q5VY43 / platelet endothelial aggregation receptor 1ENSG0000018780023
MEGF6 / O75095 / multiple EGF like domains 6ENSG0000016259122
A6BM72 / MEGF11 / multiple EGF like domains 11ENSG0000015789022


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002049  Laminin EGF domain
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR033327  Scavenger receptor class F member 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005044 scavenger receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000411 Protruding ears 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000460 Narrow nose 
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000647 Sclerocornea 
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 HP:0000678 Dental overcrowding 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000883 Thin ribs 
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 HP:0000895 Hooked clavicles 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001195 Single umbilical artery 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001601 Laryngomalacia 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001786 Slender feet 
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0001836 Camptodactyly (feet) 
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 HP:0001847 Increased length of the hallux "Increased length of the big toe." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002987 Elbow contractures 
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 HP:0003031 Ulnar bowing "Bending of the diaphysis (shaft) of the ulna, usually in the convex posterior direction." [HPO:curators]
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0003100 Thin long bones 
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 HP:0005033 ulnar hypoplasia, distal 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006236 Long, slender metacarpals 
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 HP:0006380 Knee flexion deformities 
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 HP:0006633 Glenoid hypoplasia "Underdevelopment of the glenoid fossa, which is the cavity in the lateral part of the scapula which articulates with the head of the humerus." [HPO:curators]
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0010307 Stridor "Stridor is a high pitched sound resulting from turbulent air flow in the upper airway." [HPO:curators]
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 HP:0010493 Increased length of metacarpals "An abnormally increased length of the metacarpal bones." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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