ENSGALG00000000581


Gallus gallus

Features
Gene ID: ENSGALG00000000581
  
Biological name :DDX42
  
Synonyms : ATP-dependent RNA helicase DDX42 / DDX42
  
Possible biological names infered from orthology : DEAD-box helicase 42 / Q810A7 / Q86XP3
  
Species: Gallus gallus
  
Chr. number: 27
Strand: 1
Band:
Gene start: 2989797
Gene end: 3006212
  
Corresponding Affymetrix probe sets: Gga.5156.1.S1_a_at (Chicken Array)   Gga.5156.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000062172
Ensembl peptide - ENSGALP00000000810
NCBI entrez gene - 419959     See in Manteia.
RefSeq - XM_015299325
RefSeq - NM_001030926
RefSeq Peptide - NP_001026097
swissprot - A0A1L1RTM9
swissprot - F1NJ40
Ensembl - ENSGALG00000000581
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx42ENSDARG00000037928Danio rerio
 DDX42ENSG00000198231Homo sapiens
 Ddx42ENSMUSG00000020705Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX17 / DEAD-box helicase 17 / Q501J6* / Q92841* / Probable ATP-dependent RNA helicase DDX17 *ENSGALG0000003736024
DDX5 / DEAD-box helicase 5 / P17844* / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), transcript variant 3, mRNA.*ENSGALG0000000353223
DDX53* / DDX43* / Q86TM3* / Q9NXZ2* / DEAD-box helicase 53* / DEAD-box helicase 43*ENSGALG0000001592820


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008104 protein localization IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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