ENSGALG00000001802


Gallus gallus

Features
Gene ID: ENSGALG00000001802
  
Biological name :JMJD6
  
Synonyms : bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 / JMJD6
  
Possible biological names infered from orthology : arginine demethylase and lysine hydroxylase / Q6NYC1 / Q9ERI5
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 4287924
Gene end: 4299050
  
Corresponding Affymetrix probe sets: GgaAffx.11482.1.S1_s_at (Chicken Array)   GgaAffx.20273.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002781
NCBI entrez gene - 417355     See in Manteia.
RefSeq - NM_001030703
RefSeq Peptide - NP_001025874
swissprot - F1NGN4
Ensembl - ENSGALG00000001802
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 jmjd6ENSDARG00000102896Danio rerio
 JMJD6ENSG00000070495Homo sapiens
 Jmjd6ENSMUSG00000056962Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
JMJD4 / jmjC domain-containing protein 4 / Q8BFT6* / Q9H9V9* / jumonji domain containing 4*ENSGALG0000000541720


Protein motifs (from Interpro)
Interpro ID Name
 IPR003347  JmjC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0002040 sprouting angiogenesis IEA
 biological_processGO:0007166 cell surface receptor signaling pathway IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0018395 peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine IEA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0042116 macrophage activation IEA
 biological_processGO:0043277 apoptotic cell clearance IEA
 biological_processGO:0043654 recognition of apoptotic cell IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0048821 erythrocyte development IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0070078 histone H3-R2 demethylation IEA
 biological_processGO:0070079 histone H4-R3 demethylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0033746 histone demethylase activity (H3-R2 specific) IEA
 molecular_functionGO:0033749 histone demethylase activity (H4-R3 specific) IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0070815 peptidyl-lysine 5-dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
HDMs demethylate histones


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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