ENSGALG00000001817


Gallus gallus

Features
Gene ID: ENSGALG00000001817
  
Biological name :CTCF
  
Synonyms : CCCTC-binding factor / CTCF
  
Possible biological names infered from orthology : Mus musculus CCCTC-binding factor (Ctcf), transcript variant 2, mRNA. / P49711 / Q61164
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 1167098
Gene end: 1199514
  
Corresponding Affymetrix probe sets: Gga.3278.1.S1_s_at (Chicken Array)   GgaAffx.21367.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058125
Ensembl peptide - ENSGALP00000002808
NCBI entrez gene - 396274     See in Manteia.
RefSeq - XM_015279122
RefSeq - XM_015279119
RefSeq - XM_015279120
RefSeq - XM_015279121
RefSeq - NM_205332
RefSeq Peptide - NP_990663
swissprot - F1NFT1
swissprot - A0A1D5PYS0
Ensembl - ENSGALG00000001817
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ctcfENSDARG00000056621Danio rerio
 CTCFENSG00000102974Homo sapiens
 CtcfENSMUSG00000005698Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZFP64 / ZFP64 zinc finger protein / Q9NTW7* / Q99KE8* / Q9NPA5* / zinc finger protein 64*ENSGALG0000003885820
ZNF335 / zinc finger protein 335 / A2A5K6* / Q9H4Z2* / Zfp335*ENSGALG0000004137011


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006306 DNA methylation IEA
 biological_processGO:0006349 regulation of gene expression by genetic imprinting IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010216 maintenance of DNA methylation IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0031060 regulation of histone methylation IEA
 biological_processGO:0035065 regulation of histone acetylation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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