ENSGALG00000001986


Gallus gallus

Features
Gene ID: ENSGALG00000001986
  
Biological name :VCP
  
Synonyms : VCP
  
Possible biological names infered from orthology : P55072 / Q01853 / valosin containing protein
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 8540992
Gene end: 8562186
  
Corresponding Affymetrix probe sets: Gga.10045.1.S1_at (Chicken Array)   GgaAffx.11388.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003089
Ensembl peptide - ENSGALP00000051414
Ensembl peptide - ENSGALP00000047346
NCBI entrez gene - 427410     See in Manteia.
RefSeq - NM_001044664
RefSeq Peptide - NP_001038129
swissprot - A0A1D5PF52
swissprot - A0A1D5P3U1
swissprot - Q5ZMU9
Ensembl - ENSGALG00000001986
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vcpENSDARG00000020008Danio rerio
 VCPENSG00000165280Homo sapiens
 VcpENSMUSG00000028452Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003338  CDC48, N-terminal subdomain
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR004201  CDC48, domain 2
 IPR005938  AAA ATPase, CDC48 family
 IPR009010  Aspartate decarboxylase-like domain superfamily
 IPR015415  Vps4 oligomerisation, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029067  CDC48 domain 2-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH
ABC-family proteins mediated transport
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
Hedgehog ligand biogenesis
Josephin domain DUBs
Ovarian tumor domain proteases
Neutrophil degranulation
Protein methylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr