ENSGALG00000002639


Gallus gallus

Features
Gene ID: ENSGALG00000002639
  
Biological name :TRPC1
  
Synonyms : transient receptor potential cation channel subfamily C member 1 / TRPC1
  
Possible biological names infered from orthology : P48995
  
Species: Gallus gallus
  
Chr. number: 9
Strand: 1
Band:
Gene start: 10547997
Gene end: 10568737
  
Corresponding Affymetrix probe sets: Gga.11780.1.S1_s_at (Chicken Array)   Gga.13098.1.S1_at (Chicken Array)   GgaAffx.20105.1.S1_at (Chicken Array)   GgaAffx.20105.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000064132
Ensembl peptide - ENSGALP00000004146
Ensembl peptide - ENSGALP00000054703
NCBI entrez gene - 424776     See in Manteia.
RefSeq - XM_015276873
RefSeq - NM_001004409
RefSeq Peptide - NP_001004409
swissprot - Q5XUL8
swissprot - Q6DMS2
swissprot - A0A1D5PPA4
Ensembl - ENSGALG00000002639
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trpc1ENSDARG00000061203Danio rerio
 TRPC1ENSG00000144935Homo sapiens
 Trpc1ENSMUSG00000032839Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRPC4 / transient receptor potential cation channel subfamily C member 4 / Q9QUQ5* / Q9UBN4*ENSGALG0000001704445
TRPC5 / transient receptor potential cation channel subfamily C member 5 / Q9QX29* / Q9UL62*ENSGALG0000000797245
TRPC6 / transient receptor potential cation channel subfamily C member 6 / Q61143* / Q9Y210*ENSGALG0000002941636
TRPC3 / transient receptor potential cation channel subfamily C member 3 / Q13507*ENSGALG0000001187535
TRPC7 / transient receptor potential cation channel subfamily C member 7 / Q9HCX4* / Q9WVC5*ENSGALG0000000629735


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR002153  Transient receptor potential channel, canonical
 IPR004729  Transient receptor potential channel
 IPR005457  Transient receptor potential channel, canonical 1
 IPR005821  Ion transport domain
 IPR013555  Transient receptor ion channel domain
 IPR020683  Ankyrin repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006828 manganese ion transport IBA
 biological_processGO:0042438 melanin biosynthetic process IEA
 biological_processGO:0051281 positive regulation of release of sequestered calcium ion into cytosol IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IEA
 biological_processGO:0051592 response to calcium ion IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043235 receptor complex IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005262 calcium channel activity IEA
 molecular_functionGO:0015279 store-operated calcium channel activity IBA
 molecular_functionGO:0070679 inositol 1,4,5 trisphosphate binding IEA


Pathways (from Reactome)
Pathway description
TRP channels
Ion homeostasis
Antigen activates B Cell Receptor (BCR) leading to generation of second messengers


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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