ENSGALG00000003705


Gallus gallus

Features
Gene ID: ENSGALG00000003705
  
Biological name :VPS13C
  
Synonyms : vacuolar protein sorting 13 homolog C / VPS13C
  
Possible biological names infered from orthology : Q709C8 / Q8BX70 / vacuolar protein sorting 13C
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 4391054
Gene end: 4471783
  
Corresponding Affymetrix probe sets: Gga.10284.1.S1_s_at (Chicken Array)   Gga.19802.1.S1_at (Chicken Array)   GgaAffx.2316.1.S1_at (Chicken Array)   GgaAffx.2317.1.S1_s_at (Chicken Array)   GgaAffx.2318.1.S1_at (Chicken Array)   GgaAffx.25949.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005861
NCBI entrez gene - 415376     See in Manteia.
RefSeq - XM_001232999
RefSeq - XM_004943746
RefSeq - XM_015279011
swissprot - E1C224
Ensembl - ENSGALG00000003705
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13cENSDARG00000074465Danio rerio
 Q709C8ENSG00000129003Homo sapiens
 Q8BX70ENSMUSG00000035284Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS13A / vacuolar protein sorting-associated protein 13A ENSGALG0000001517037
VPS13D / vacuolar protein sorting 13 homolog D / Q5THJ4* / vacuolar protein sorting 13D*ENSGALG0000003477721
VPS13B / vacuolar protein sorting 13 homolog B / Q7Z7G8* / Q80TY5* / vacuolar protein sorting 13B*ENSGALG0000004117910
ENSGALG000000447921
ENSGALG000000460930


Protein motifs (from Interpro)
Interpro ID Name
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015412  Autophagy-related, C-terminal
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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