ENSGALG00000004818


Gallus gallus

Features
Gene ID: ENSGALG00000004818
  
Biological name :RPL6
  
Synonyms : ribosomal protein L6 / RPL6
  
Possible biological names infered from orthology : P47911 / Q02878
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 6428446
Gene end: 6441550
  
Corresponding Affymetrix probe sets: Gga.3486.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061977
Ensembl peptide - ENSGALP00000064727
Ensembl peptide - ENSGALP00000064416
Ensembl peptide - ENSGALP00000064330
Ensembl peptide - ENSGALP00000063846
Ensembl peptide - ENSGALP00000063554
Ensembl peptide - ENSGALP00000063025
Ensembl peptide - ENSGALP00000007680
Ensembl peptide - ENSGALP00000061430
NCBI entrez gene - 373957     See in Manteia.
RefSeq - NM_204152
RefSeq Peptide - NP_989483
swissprot - A0A1L1RYC3
swissprot - A0A1L1RXI6
swissprot - A0A1L1RW16
swissprot - A0A1L1RT36
swissprot - F6UD95
swissprot - A0A1L1S0U6
swissprot - Q8UWG7
swissprot - A0A1L1RZM3
Ensembl - ENSGALG00000004818
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl6ENSDARG00000058451Danio rerio
 RPL6ENSG00000089009Homo sapiens
 Rpl6ENSMUSG00000029614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000915  60S ribosomal protein L6E
 IPR005568  Ribosomal protein L6, N-terminal
 IPR008991  Translation protein SH3-like domain superfamily
 IPR014722  Ribosomal protein L2, domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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