ENSMUSG00000029614


Mus musculus

Features
Gene ID: ENSMUSG00000029614
  
Biological name :Rpl6
  
Synonyms : P47911 / ribosomal protein L6 / Rpl6
  
Possible biological names infered from orthology : Q02878
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 121204481
Gene end: 121209241
  
Corresponding Affymetrix probe sets: 10356351 (MoGene1.0st)   10366301 (MoGene1.0st)   10525185 (MoGene1.0st)   10525187 (MoGene1.0st)   1416546_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000031617
Ensembl peptide - ENSMUSP00000143981
NCBI entrez gene - 19988     See in Manteia.
MGI - MGI:108057
RefSeq - XM_006530227
RefSeq - NM_011290
RefSeq Peptide - NP_035420
swissprot - P47911
swissprot - Q3UCH0
swissprot - A0A0J9YU32
Ensembl - ENSMUSG00000029614
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl6ENSDARG00000058451Danio rerio
 RPL6ENSGALG00000004818Gallus gallus
 RPL6ENSG00000089009Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000915  60S ribosomal protein L6E
 IPR005568  Ribosomal protein L6, N-terminal
 IPR008991  Translation protein SH3-like domain superfamily
 IPR014722  Ribosomal protein L2, domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0002181 cytoplasmic translation IEA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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