ENSGALG00000005181


Gallus gallus

Features
Gene ID: ENSGALG00000005181
  
Biological name :SEC24C
  
Synonyms : SEC24C / SEC24 homolog C, COPII coat complex component
  
Possible biological names infered from orthology : P53992 / Sec24 related gene family, member C (S. cerevisiae)
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 15935923
Gene end: 15962119
  
Corresponding Affymetrix probe sets: Gga.8934.1.S1_at (Chicken Array)   GgaAffx.3246.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008311
NCBI entrez gene - 423742     See in Manteia.
RefSeq - XM_004942080
RefSeq - XM_421617
RefSeq - XM_015288324
RefSeq - XM_015288325
swissprot - E1BUD8
Ensembl - ENSGALG00000005181
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec24cENSDARG00000103516Danio rerio
 P53992ENSG00000176986Homo sapiens
 Sec24cENSMUSG00000039367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*ENSGALG0000001199855
SEC24B / protein transport protein Sec24B / O95487* / SEC24 homolog B, COPII coat complex component* / Sec24 related gene family, member B (S. cerevisiae)*ENSGALG0000003548227
SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*ENSGALG0000000641725


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR006895  Zinc finger, Sec23/Sec24-type
 IPR006896  Sec23/Sec24, trunk domain
 IPR006900  Sec23/Sec24, helical domain
 IPR007123  Gelsolin-like domain
 IPR012990  Sec23/Sec24 beta-sandwich
 IPR029006  ADF-H/Gelsolin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0090110 cargo loading into COPII-coated vesicle IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 molecular_functionGO:0000149 SNARE binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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