ENSGALG00000011998


Gallus gallus

Features
Gene ID: ENSGALG00000011998
  
Biological name :SEC24D
  
Synonyms : SEC24D / SEC24 homolog D, COPII coat complex component
  
Possible biological names infered from orthology : O94855 / Sec24 related gene family, member D (S. cerevisiae)
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 55278884
Gene end: 55326569
  
Corresponding Affymetrix probe sets: Gga.11410.1.A1_s_at (Chicken Array)   Gga.5113.1.S1_s_at (Chicken Array)   GgaAffx.23729.1.S1_at (Chicken Array)   GgaAffx.23729.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019555
NCBI entrez gene - 422683     See in Manteia.
RefSeq - XM_015276355
RefSeq - XM_015276356
RefSeq - XM_015276357
RefSeq - XM_015276358
RefSeq - XM_004941242
swissprot - E1BSP8
Ensembl - ENSGALG00000011998
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec24dENSDARG00000045946Danio rerio
 O94855ENSG00000150961Homo sapiens
 Sec24dENSMUSG00000039234Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC24C / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*ENSGALG0000000518157
SEC24B / protein transport protein Sec24B / O95487* / SEC24 homolog B, COPII coat complex component* / Sec24 related gene family, member B (S. cerevisiae)*ENSGALG0000003548226
SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*ENSGALG0000000641725


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR006895  Zinc finger, Sec23/Sec24-type
 IPR006896  Sec23/Sec24, trunk domain
 IPR006900  Sec23/Sec24, helical domain
 IPR007123  Gelsolin-like domain
 IPR012990  Sec23/Sec24 beta-sandwich
 IPR029006  ADF-H/Gelsolin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0090110 cargo loading into COPII-coated vesicle IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 molecular_functionGO:0000149 SNARE binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001013 PPP6C / protein phosphatase 6 catalytic subunit / O00743* / Q9CQR6* / Serine/threonine-protein phosphatase 6 catalytic subunit *  / reaction
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex / reaction
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000031582 RAB1B / RAB1A, member RAS oncogene family / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A *  / complex / reaction
 ENSGALG00000001107 GOSR2 / O14653* / O35166* / AC005670.2* / golgi SNAP receptor complex member 2*  / complex / reaction
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / reaction / complex
 ENSGALG00000004424 SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / reaction / complex
 ENSGALG00000002364 SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*  / reaction / complex
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / reaction / complex
 ENSGALG00000002160 B2M / P21611 / Beta-2-microglobulin / P01887* / P61769*  / complex
 ENSGALG00000004594 CD74 / CD74 molecule / P04233* / P04441* / CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)*  / complex
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / reaction / complex
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex






 

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