ENSGALG00000004424


Gallus gallus

Features
Gene ID: ENSGALG00000004424
  
Biological name :SEC16B
  
Synonyms : protein transport protein Sec16B / SEC16B
  
Possible biological names infered from orthology : Q91XT4 / Q96JE7 / SEC16 homolog B, endoplasmic reticulum export factor
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 6631529
Gene end: 6642933
  
Corresponding Affymetrix probe sets: Gga.14027.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048637
Ensembl peptide - ENSGALP00000054368
Ensembl peptide - ENSGALP00000007034
NCBI entrez gene - 424431     See in Manteia.
RefSeq - XM_015290299
RefSeq - XM_015290294
RefSeq - XM_015290296
RefSeq - XM_015290297
RefSeq - XM_015290298
RefSeq - NM_001031269
RefSeq - XM_015290289
RefSeq - XM_015290290
RefSeq - XM_015290291
RefSeq - XM_015290292
RefSeq - XM_015290293
RefSeq Peptide - NP_001026440
swissprot - A0A1D5PNC8
swissprot - F1NT48
swissprot - A0A1D5P7E8
Ensembl - ENSGALG00000004424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec16bENSDARG00000099554Danio rerio
 Q96JE7ENSG00000120341Homo sapiens
 Q91XT4ENSMUSG00000026589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*ENSGALG0000000236429


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024340  Sec16, central conserved domain
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007029 endoplasmic reticulum organization IEA
 biological_processGO:0007031 peroxisome organization IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0016559 peroxisome fission IEA
 biological_processGO:0048208 COPII vesicle coating IEA
 biological_processGO:0070863 positive regulation of protein exit from endoplasmic reticulum IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002364 SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*  / complex
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex / reaction
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / reaction / complex
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / reaction / complex
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / complex / reaction
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / reaction / complex
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / reaction / complex
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / complex / reaction






 

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