ENSDARG00000099554


Danio rerio

Features
Gene ID: ENSDARG00000099554
  
Biological name :sec16b
  
Synonyms : sec16b / SEC16 homolog B, endoplasmic reticulum export factor
  
Possible biological names infered from orthology : Protein transport protein Sec16B / Q91XT4 / Q96JE7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 23891230
Gene end: 23931442
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135439
Ensembl peptide - ENSDARP00000135911
NCBI entrez gene - 553356     See in Manteia.
swissprot - F1QN96
ZFIN ID - ZDB-GENE-050208-274
Ensembl - ENSDARG00000099554
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC16BENSGALG00000004424Gallus gallus
 Q96JE7ENSG00000120341Homo sapiens
 Q91XT4ENSMUSG00000026589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048208 COPII vesicle coating IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / complex / reaction
 ENSDARG00000021082 sec31a / SEC31 homolog A, COPII coat complex component / O94979* / Q3UPL0* / Protein transport protein Sec31A *  / reaction / complex
 ENSDARG00000003641 tfg / trk-fused gene / Q92734*  / complex
 ENSDARG00000054807 sec13 / SEC13 homolog, nuclear pore and COPII coat complex component / P55735* / Q9D1M0*  / reaction / complex
 ENSDARG00000104375 sec24a / SEC24 homolog A, COPII coat complex component / O95486*  / complex
 ENSDARG00000071906 sec24b / SEC24 homolog B, COPII coat complex component / O95487* / Sec24 related gene family, member B (S. cerevisiae)*  / complex
 ENSDARG00000103516 sec24c / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*  / complex
 ENSDARG00000104230 Q7SZE5 / sec23a / Sec23 homolog A, COPII coat complex component / Q15436* / Q01405* / Protein transport protein Sec23A * / Sec23 homolog A, coat complex II component*  / complex
 ENSDARG00000103403 sar1b / secretion associated, Ras related GTPase 1B / Q9Y6B6*  / complex






 

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