ENSGALG00000010150


Gallus gallus

Features
Gene ID: ENSGALG00000010150
  
Biological name :SEC23A
  
Synonyms : SEC23A / Sec23 homolog A, coat complex II component
  
Possible biological names infered from orthology : Protein transport protein Sec23A / Q01405 / Q15436
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 37606810
Gene end: 37632575
  
Corresponding Affymetrix probe sets: Gga.3599.1.S1_at (Chicken Array)   Gga.3599.2.S1_a_at (Chicken Array)   Gga.3599.2.S1_s_at (Chicken Array)   Gga.3599.3.S1_at (Chicken Array)   Gga.3599.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016481
Ensembl peptide - ENSGALP00000046119
NCBI entrez gene - 423335     See in Manteia.
RefSeq - XM_421250
RefSeq - XM_004941775
swissprot - E1C3Y5
swissprot - A0A1D5P0E2
Ensembl - ENSGALG00000010150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7SZE5ENSDARG00000104230Danio rerio
 Q15436ENSG00000100934Homo sapiens
 Q01405ENSMUSG00000020986Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC23B / protein transport protein Sec23A / Q15437* / Q9D662* / Sec23 homolog B, coat complex II component* / Mus musculus SEC23 homolog B, COPII coat complex component (Sec23b), transcrip...ENSGALG0000000879385


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR006895  Zinc finger, Sec23/Sec24-type
 IPR006896  Sec23/Sec24, trunk domain
 IPR006900  Sec23/Sec24, helical domain
 IPR007123  Gelsolin-like domain
 IPR012990  Sec23/Sec24 beta-sandwich
 IPR029006  ADF-H/Gelsolin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0090110 cargo loading into COPII-coated vesicle IEA
 biological_processGO:0090114 COPII-coated vesicle budding IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IEA
 cellular_componentGO:0019898 extrinsic component of membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 cellular_componentGO:0030134 COPII-coated ER to Golgi transport vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070971 endoplasmic reticulum exit site IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex / reaction
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / reaction / complex
 ENSGALG00000002364 SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*  / reaction / complex
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / complex / reaction
 ENSGALG00000002160 B2M / P21611 / Beta-2-microglobulin / P01887* / P61769*  / complex
 ENSGALG00000010189 Mia2* / CTAGE1* / CTAGE4* / CTAGE5* / CTAGE6* / CTAGE8* / CTAGE9* / A4D2H0* / A4FU28* / O15320* / P0CG41* / Q86UF2* / Q8IX94* / Q91ZV0* / Q96PC5* / Q96RT6* / Q9HC47* / CTAGE15* / CTAGE fami...  / complex / reaction
 ENSGALG00000004424 SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / reaction / complex
 ENSGALG00000004594 CD74 / CD74 molecule / P04233* / P04441* / CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)*  / complex
 ENSGALG00000031582 RAB1B / RAB1A, member RAS oncogene family / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A *  / complex / reaction
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / complex / reaction
 ENSGALG00000001107 GOSR2 / O14653* / O35166* / AC005670.2* / golgi SNAP receptor complex member 2*  / complex / reaction
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / reaction / complex
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / complex / reaction
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex






 

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