ENSGALG00000002364


Gallus gallus

Features
Gene ID: ENSGALG00000002364
  
Biological name :SEC16A
  
Synonyms : SEC16A / SEC16 homolog A, endoplasmic reticulum export factor
  
Possible biological names infered from orthology : O15027
  
Species: Gallus gallus
  
Chr. number: 17
Strand: 1
Band:
Gene start: 8336017
Gene end: 8357973
  
Corresponding Affymetrix probe sets: Gga.18782.1.S1_s_at (Chicken Array)   GgaAffx.25452.1.S1_at (Chicken Array)   GgaAffx.25467.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046574
Ensembl peptide - ENSGALP00000003718
NCBI entrez gene - 417136     See in Manteia.
RefSeq - XM_415419
RefSeq - XM_004945977
RefSeq - XM_015279795
RefSeq - XM_004945972
RefSeq - XM_004945973
RefSeq - XM_004945974
RefSeq - XM_004945976
swissprot - F1NZ85
swissprot - A0A1D5P1N6
Ensembl - ENSGALG00000002364
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O15027ENSG00000148396Homo sapiens
 Sec16aENSMUSG00000026924Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*ENSGALG0000000442414


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024340  Sec16, central conserved domain
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048208 COPII vesicle coating IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004424 SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / complex
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / reaction / complex
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / complex / reaction
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / complex / reaction
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / reaction / complex
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr