ENSMUSG00000026924


Mus musculus

Features
Gene ID: ENSMUSG00000026924
  
Biological name :Sec16a
  
Synonyms : Sec16a / SEC16 homolog A, endoplasmic reticulum export factor
  
Possible biological names infered from orthology : O15027
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: A3
Gene start: 26409431
Gene end: 26445216
  
Corresponding Affymetrix probe sets: 10481023 (MoGene1.0st)   1426814_at (Mouse Genome 430 2.0 Array)   1426815_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121179
Ensembl peptide - ENSMUSP00000122255
Ensembl peptide - ENSMUSP00000088796
Ensembl peptide - ENSMUSP00000109716
NCBI entrez gene - 227648     See in Manteia.
MGI - MGI:2139207
RefSeq - XM_011239073
RefSeq - XM_006497910
RefSeq - XM_006497911
RefSeq - XM_006497912
RefSeq - XM_006497913
RefSeq - XM_006497914
RefSeq - NM_153125
RefSeq - XM_006497909
RefSeq Peptide - NP_694765
swissprot - F6T8X6
swissprot - F7BPW6
swissprot - A2AIX1
swissprot - E9QAT4
Ensembl - ENSMUSG00000026924
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC16AENSGALG00000002364Gallus gallus
 O15027ENSG00000148396Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91XT4 / Sec16b / Protein transport protein Sec16B / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*ENSMUSG0000002658914


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024340  Sec16, central conserved domain
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007029 endoplasmic reticulum organization ISO
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048208 COPII vesicle coating IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISO
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0016020 membrane IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000001052 Sec24b / Sec24 related gene family, member B (S. cerevisiae) / O95487* / SEC24 homolog B, COPII coat complex component*  / reaction / complex
 ENSMUSG00000020386 Sar1b / Q9CQC9 / secretion associated Ras related GTPase 1B / Q9Y6B6*  / reaction / complex
 ENSMUSG00000020986 Q01405 / Sec23a / Protein transport protein Sec23A / Q15436* / Sec23 homolog A, coat complex II component*  / reaction / complex
 ENSMUSG00000026589 Q91XT4 / Sec16b / Protein transport protein Sec16B / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / complex
 ENSMUSG00000030298 Sec13 / Q9D1M0 / SEC13 homolog, nuclear pore and COPII coat complex component / P55735*  / reaction / complex
 ENSMUSG00000055319 Sec23ip / Sec23 interacting protein / Q9Y6Y8*  / reaction / complex
 ENSMUSG00000036391 Q3U2P1 / Sec24a / Protein transport protein Sec24A / O95486* / SEC24 homolog A, COPII coat complex component*  / complex / reaction
 ENSMUSG00000039234 Sec24d / Sec24 related gene family, member D (S. cerevisiae) / O94855* / SEC24 homolog D, COPII coat complex component*  / complex / reaction
 ENSMUSG00000027879 O08547 / Sec22b / Vesicle-trafficking protein SEC22b / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex
 ENSMUSG00000035325 Q3UPL0 / Sec31a / Protein transport protein Sec31A / O94979* / SEC31 homolog A, COPII coat complex component*  / complex / reaction






 

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