ENSG00000148396


Homo sapiens

Features
Gene ID: ENSG00000148396
  
Biological name :SEC16A
  
Synonyms : O15027 / SEC16A / SEC16 homolog A, endoplasmic reticulum export factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.3
Gene start: 136440096
Gene end: 136483759
  
Corresponding Affymetrix probe sets: 215696_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387583
Ensembl peptide - ENSP00000360771
Ensembl peptide - ENSP00000403525
Ensembl peptide - ENSP00000277537
Ensembl peptide - ENSP00000290037
Ensembl peptide - ENSP00000317437
Ensembl peptide - ENSP00000325827
NCBI entrez gene - 9919     See in Manteia.
OMIM - 612854
RefSeq - XM_017015363
RefSeq - XM_011519257
RefSeq - XM_011519258
RefSeq - XM_011519259
RefSeq - XM_011519260
RefSeq - XM_011519261
RefSeq - XM_011519262
RefSeq - XM_011519263
RefSeq - XM_011519264
RefSeq - NM_001276418
RefSeq - NM_014866
RefSeq - XM_005266134
RefSeq - XM_011519246
RefSeq - XM_011519247
RefSeq - XM_011519248
RefSeq - XM_011519249
RefSeq - XM_011519250
RefSeq - XM_011519251
RefSeq - XM_011519252
RefSeq - XM_011519253
RefSeq - XM_011519254
RefSeq - XM_011519255
RefSeq - XM_011519256
RefSeq Peptide - NP_001263347
RefSeq Peptide - NP_055681
swissprot - X6RGP5
swissprot - A0A0C4DH09
swissprot - O15027
swissprot - F1T0I1
swissprot - Q8N9G1
swissprot - J3KNL6
Ensembl - ENSG00000148396
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC16AENSGALG00000002364Gallus gallus
 Sec16aENSMUSG00000026924Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96JE7 / SEC16B / SEC16 homolog B, endoplasmic reticulum export factorENSG0000012034115


Protein motifs (from Interpro)
Interpro ID Name
 IPR024298  Ancestral coatomer element 1, Sec16/Sec31
 IPR024340  Sec16, central conserved domain
 IPR024880  COPII coat assembly protein, Sec16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007029 endoplasmic reticulum organization IDA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0021762 substantia nigra development HEP
 biological_processGO:0048208 COPII vesicle coating TAS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114354 TFG / Q92734 / TRK-fused gene  / complex / reaction
 ENSG00000138802 O95487 / SEC24B / SEC24 homolog B, COPII coat complex component  / reaction / complex
 ENSG00000138674 O94979 / SEC31A / SEC31 homolog A, COPII coat complex component  / reaction / complex
 ENSG00000120341 Q96JE7 / SEC16B / SEC16 homolog B, endoplasmic reticulum export factor  / complex
 ENSG00000100934 Q15436 / SEC23A / Sec23 homolog A, coat complex II component  / complex / reaction
 ENSG00000150961 O94855 / SEC24D / SEC24 homolog D, COPII coat complex component  / reaction / complex
 ENSG00000157020 SEC13 / P55735 / SEC13 homolog, nuclear pore and COPII coat complex component  / complex / reaction
 ENSG00000176986 P53992 / SEC24C / SEC24 homolog C, COPII coat complex component  / reaction / complex
 ENSG00000113615 O95486 / SEC24A / SEC24 homolog A, COPII coat complex component  / reaction / complex
 ENSG00000107651 Q9Y6Y8 / SEC23IP / SEC23 interacting protein  / complex / reaction
 ENSG00000152700 SAR1B / Q9Y6B6 / secretion associated Ras related GTPase 1B  / complex / reaction
 ENSG00000265808 O75396 / SEC22B / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)  / reaction / complex






 

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