ENSGALG00000008419


Gallus gallus

Features
Gene ID: ENSGALG00000008419
  
Biological name :SEC13
  
Synonyms : SEC13
  
Possible biological names infered from orthology : P55735 / Q9D1M0 / SEC13 homolog, nuclear pore and COPII coat complex component
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 19491529
Gene end: 19497515
  
Corresponding Affymetrix probe sets: Gga.12581.1.S1_at (Chicken Array)   Gga.15214.1.A1_at (Chicken Array)   Gga.15214.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013700
Ensembl peptide - ENSGALP00000060372
Ensembl peptide - ENSGALP00000045416
NCBI entrez gene - 416119     See in Manteia.
RefSeq - NM_001277841
RefSeq - XM_015293127
RefSeq Peptide - NP_001264770
swissprot - E1BVC4
swissprot - A0A1L1RNL7
swissprot - A0A1D5NYF8
Ensembl - ENSGALG00000008419
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec13ENSDARG00000054807Danio rerio
 SEC13ENSG00000157020Homo sapiens
 Sec13ENSMUSG00000030298Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0090114 COPII-coated vesicle budding IEA
 biological_processGO:1904263 positive regulation of TORC1 signaling IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
COPII-mediated vesicle transport
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins
Mitotic Prometaphase
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex
 ENSGALG00000038753 SAR1B / GTP-binding protein SAR1b / Q9CQC9* / Q9Y6B6* / secretion associated Ras related GTPase 1B*  / complex / reaction
 ENSGALG00000015299 TFG / TRK-fused gene / Q92734*  / reaction / complex
 ENSGALG00000002364 SEC16A / SEC16 homolog A, endoplasmic reticulum export factor / O15027*  / reaction / complex
 ENSGALG00000002160 B2M / P21611 / Beta-2-microglobulin / P01887* / P61769*  / complex / reaction
 ENSGALG00000010150 SEC23A / Sec23 homolog A, coat complex II component / Q01405* / Q15436* / Protein transport protein Sec23A *  / complex / reaction
 ENSGALG00000004424 SEC16B / protein transport protein Sec16B / Q91XT4* / Q96JE7* / SEC16 homolog B, endoplasmic reticulum export factor*  / reaction / complex
 ENSGALG00000011998 SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*  / reaction / complex
 ENSGALG00000031582 RAB1B / RAB1A, member RAS oncogene family / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A *  / complex / reaction
 ENSGALG00000040484 SEC31A / protein transport protein Sec31A / O94979* / Q3UPL0* / SEC31 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000004594 CD74 / CD74 molecule / P04233* / P04441* / CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)*  / complex
 ENSGALG00000006417 SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*  / complex / reaction
 ENSGALG00000008419 SEC13 / P55735* / Q9D1M0* / SEC13 homolog, nuclear pore and COPII coat complex component*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr