ENSGALG00000006072


Gallus gallus

Features
Gene ID: ENSGALG00000006072
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 5408222
Gene end: 5438676
  
Corresponding Affymetrix probe sets: Gga.561.1.S1_s_at (Chicken Array)   GgaAffx.26732.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038088
Ensembl peptide - ENSGALP00000064192
Ensembl peptide - ENSGALP00000063726
NCBI entrez gene - 395944     See in Manteia.
RefSeq - XM_015281214
swissprot - E1BXV5
swissprot - A0A1L1RZA0
swissprot - A0A1L1RY03
Ensembl - ENSGALG00000006072
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scn12aaENSDARG00000090724Danio rerio
 scn12abENSDARG00000102312Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCN5A / Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. / Q9JJV9* / Q14524* / Sodium channel protein type 5 subunit alpha * / sodium voltage-gated channel alpha subunit 5*ENSGALG0000000611267
SCN2A / sodium voltage-gated channel alpha subunit 2 / Q99250* / sodium channel, voltage-gated, type II, alpha*ENSGALG0000001100958
SCN1A / sodium voltage-gated channel alpha subunit 1 / A2APX8* / P35498* / Sodium channel protein type 1 subunit alpha *ENSGALG0000001094358
SCN9A / sodium channel protein type 9 subunit alpha / SCN7A* / Q62205* / Q15858* / Q01118* / sodium voltage-gated channel alpha subunit 7* / sodium voltage-gated channel alpha subunit 9*ENSGALG0000002779357
SCN3A / sodium voltage-gated channel alpha subunit 3 / Q9NY46* / sodium channel, voltage-gated, type III, alpha*ENSGALG0000001104057
SCN8A / sodium voltage-gated channel alpha subunit 8 / Q9UQD0* / sodium channel, voltage-gated, type VIII, alpha*ENSGALG0000004372856
SCN4A / Gallus gallus sodium voltage-gated channel alpha subunit 4 (SCN4A), mRNA. / P35499* / sodium voltage-gated channel alpha subunit 4* / sodium channel, voltage-gated, type IV, alpha*ENSGALG0000003442751
SCN11A / Gallus gallus sodium voltage-gated channel alpha subunit 11 (SCN11A), mRNA. / Q9UI33* / Q9R053* / Sodium channel protein type 11 subunit alpha * / sodium voltage-gated channel alph...ENSGALG0000002770249
CACNA1G / calcium voltage-gated channel subunit alpha1 G / O43497* / calcium channel, voltage-dependent, T type, alpha 1G subunit*ENSGALG0000000762321
CACNA1I / calcium voltage-gated channel subunit alpha1 I / Q9P0X4* / calcium channel, voltage-dependent, alpha 1I subunit*ENSGALG0000003505121
CACNA1H / calcium voltage-gated channel subunit alpha1 H / O95180* / voltage-dependent T-type calcium channel subunit alpha-1H isoform 2 *ENSGALG0000000521517


Protein motifs (from Interpro)
Interpro ID Name
 IPR001696  Voltage gated sodium channel, alpha subunit
 IPR005821  Ion transport domain
 IPR008053  Voltage gated sodium channel, alpha-5 subunit
 IPR010526  Sodium ion transport-associated
 IPR024583  Voltage-gated Na+ ion channel, cytoplasmic domain
 IPR027359  Voltage-dependent channel domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0019228 neuronal action potential IBA
 biological_processGO:0019233 sensory perception of pain IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0086010 membrane depolarization during action potential IBA
 cellular_componentGO:0001518 voltage-gated sodium channel complex IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005248 voltage-gated sodium channel activity IEA
 molecular_functionGO:0005272 sodium channel activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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