ENSGALG00000006404


Gallus gallus

Features
Gene ID: ENSGALG00000006404
  
Biological name :DDX46
  
Synonyms : DDX46 / DEAD-box helicase 46
  
Possible biological names infered from orthology : Probable ATP-dependent RNA helicase DDX46 / Q569Z5 / Q7L014
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 15778025
Gene end: 15794338
  
Corresponding Affymetrix probe sets: Gga.10433.1.S1_s_at (Chicken Array)   GgaAffx.21925.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010325
NCBI entrez gene - 416312     See in Manteia.
RefSeq - XM_004944995
swissprot - E1BSC0
Ensembl - ENSGALG00000006404
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx46ENSDARG00000099458Danio rerio
 DDX46ENSG00000145833Homo sapiens
 Ddx46ENSMUSG00000021500Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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