ENSMUSG00000021500


Mus musculus

Features
Gene ID: ENSMUSG00000021500
  
Biological name :Ddx46
  
Synonyms : Ddx46 / Probable ATP-dependent RNA helicase DDX46 / Q569Z5
  
Possible biological names infered from orthology : DEAD-box helicase 46 / Q7L014
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: B1
Gene start: 55635027
Gene end: 55681256
  
Corresponding Affymetrix probe sets: 10405511 (MoGene1.0st)   1424569_at (Mouse Genome 430 2.0 Array)   1424570_at (Mouse Genome 430 2.0 Array)   1424571_at (Mouse Genome 430 2.0 Array)   1455103_at (Mouse Genome 430 2.0 Array)   1457744_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000097078
Ensembl peptide - ENSMUSP00000133245
Ensembl peptide - ENSMUSP00000153328
Ensembl peptide - ENSMUSP00000155176
NCBI entrez gene - 212880     See in Manteia.
MGI - MGI:1920895
RefSeq - XM_006517202
RefSeq - NM_001282055
RefSeq Peptide - NP_001268984
swissprot - Q569Z5
swissprot - F8WHR6
Ensembl - ENSMUSG00000021500
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx46ENSDARG00000099458Danio rerio
 DDX46ENSGALG00000006404Gallus gallus
 DDX46ENSG00000145833Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr