ENSGALG00000006783


Gallus gallus

Features
Gene ID: ENSGALG00000006783
  
Biological name :PLOD2
  
Synonyms : PLOD2 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
  
Possible biological names infered from orthology : O00469 / Q9R0B9
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 11508788
Gene end: 11558301
  
Corresponding Affymetrix probe sets: Gga.1944.1.S1_at (Chicken Array)   Gga.3522.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010958
Ensembl peptide - ENSGALP00000061782
Ensembl peptide - ENSGALP00000046053
NCBI entrez gene - 424882     See in Manteia.
RefSeq - XM_004943310
RefSeq - XM_422695
swissprot - A0A1L1RSJ4
swissprot - A0A1D5P079
swissprot - F1NXB0
Ensembl - ENSGALG00000006783
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 plod2ENSDARG00000011821Danio rerio
 PLOD2ENSG00000152952Homo sapiens
 Plod2ENSMUSG00000032374Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PLOD1 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor / Q02809* / Q9R0E2* / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1*ENSGALG0000000453157
COLGALT2 / collagen beta(1-O)galactosyltransferase 2 / Q6NVG7* / Q8IYK4* / Procollagen galactosyltransferase 2 *ENSGALG0000003832014
CERCAM / cerebral endothelial cell adhesion molecule / A3KGW5* / Q5T4B2* / Inactive glycosyltransferase 25 family member 3 *ENSGALG0000000498612


Protein motifs (from Interpro)
Interpro ID Name
 IPR001006  Procollagen-lysine 5-dioxygenase
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR006620  Prolyl 4-hydroxylase, alpha subunit
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0017185 peptidyl-lysine hydroxylation IEA
 biological_processGO:0046947 hydroxylysine biosynthetic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0008475 procollagen-lysine 5-dioxygenase activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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