ENSG00000152952


Homo sapiens

Features
Gene ID: ENSG00000152952
  
Biological name :PLOD2
  
Synonyms : O00469 / PLOD2 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q24
Gene start: 146069440
Gene end: 146163653
  
Corresponding Affymetrix probe sets: 202619_s_at (Human Genome U133 Plus 2.0 Array)   202620_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419354
Ensembl peptide - ENSP00000420094
Ensembl peptide - ENSP00000419963
Ensembl peptide - ENSP00000419880
Ensembl peptide - ENSP00000282903
Ensembl peptide - ENSP00000353170
NCBI entrez gene - 5352     See in Manteia.
OMIM - 601865
RefSeq - XM_017006625
RefSeq - NM_000935
RefSeq - NM_182943
RefSeq - XM_005247535
RefSeq Peptide - NP_000926
RefSeq Peptide - NP_891988
swissprot - E7ETU9
swissprot - C9JXZ0
swissprot - F8WEW3
swissprot - O00469
Ensembl - ENSG00000152952
  
Related genetic diseases (OMIM): 609220 - Bruck syndrome 2, 609220
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 plod2ENSDARG00000011821Danio rerio
 PLOD2ENSGALG00000006783Gallus gallus
 Plod2ENSMUSG00000032374Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PLOD1 / Q02809 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1ENSG0000008344457
PLOD3 / O60568 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 3ENSG0000010639756
Q8IYK4 / COLGALT2 / collagen beta(1-O)galactosyltransferase 2ENSG0000019875616
Q8NBJ5 / COLGALT1 / collagen beta(1-O)galactosyltransferase 1ENSG0000013030914
CERCAM / Q5T4B2 / cerebral endothelial cell adhesion moleculeENSG0000016712313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001006  Procollagen-lysine 5-dioxygenase
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR006620  Prolyl 4-hydroxylase, alpha subunit
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEP
 biological_processGO:0006464 cellular protein modification process TAS
 biological_processGO:0017185 peptidyl-lysine hydroxylation ISS
 biological_processGO:0046947 hydroxylysine biosynthetic process ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030867 rough endoplasmic reticulum membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0008475 procollagen-lysine 5-dioxygenase activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000325 Triangular facies 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001059 Pterygia "Pterygia are winglike triangular membranes occurring in the neck, eyes, knees, elbows, ankles or digits." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002659 Increased susceptibility to fractures "An abnormally increased tendency to fractures of bones caused by an abnormal reduction in bone strength that is generally associated with an increased risk of fracture." [HPO:sdoelken]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002808 Kyphosis 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002987 Elbow contractures 
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 HP:0003080 Hydroxyprolinuria 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006380 Knee flexion deformities 
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 HP:0006487 Bowing of the long bones 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000083444 PLOD1 / Q02809 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1  / reaction
 ENSG00000106397 PLOD3 / O60568 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 3  / reaction
 ENSG00000152952 PLOD2 / O00469 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 2  / reaction / complex






 

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