ENSG00000083444


Homo sapiens

Features
Gene ID: ENSG00000083444
  
Biological name :PLOD1
  
Synonyms : PLOD1 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 / Q02809
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.22
Gene start: 11934205
Gene end: 11975538
  
Corresponding Affymetrix probe sets: 200827_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000414443
Ensembl peptide - ENSP00000196061
Ensembl peptide - ENSP00000405372
NCBI entrez gene - 5351     See in Manteia.
OMIM - 153454
RefSeq - NM_000302
RefSeq - NM_001316320
RefSeq Peptide - NP_000293
RefSeq Peptide - NP_001303249
swissprot - Q5JXB8
swissprot - Q02809
swissprot - Q5JXB7
swissprot - A0A024R4H0
Ensembl - ENSG00000083444
  
Related genetic diseases (OMIM): 225400 - Ehlers-Danlos syndrome, kyphoscoliotic type, 1, 225400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 plod1aENSDARG00000059746Danio rerio
 PLOD1ENSGALG00000004531Gallus gallus
 Plod1ENSMUSG00000019055Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PLOD2 / O00469 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 2ENSG0000015295260
PLOD3 / O60568 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 3ENSG0000010639758
Q8NBJ5 / COLGALT1 / collagen beta(1-O)galactosyltransferase 1ENSG0000013030915
Q8IYK4 / COLGALT2 / collagen beta(1-O)galactosyltransferase 2ENSG0000019875615
CERCAM / Q5T4B2 / cerebral endothelial cell adhesion moleculeENSG0000016712314


Protein motifs (from Interpro)
Interpro ID Name
 IPR001006  Procollagen-lysine 5-dioxygenase
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR006620  Prolyl 4-hydroxylase, alpha subunit
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEP
 biological_processGO:0006464 cellular protein modification process NAS
 biological_processGO:0008544 epidermis development TAS
 biological_processGO:0017185 peptidyl-lysine hydroxylation ISS
 biological_processGO:0046947 hydroxylysine biosynthetic process TAS
 biological_processGO:0055114 oxidation-reduction process TAS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030867 rough endoplasmic reticulum membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1902494 catalytic complex IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0008475 procollagen-lysine 5-dioxygenase activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0042803 protein homodimerization activity TAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000098 Increased body height 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000488 Retinopathy 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000592 Blue sclerae 
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 HP:0000618 Blindness 
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 HP:0000678 Dental overcrowding 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000974 Hyperextensible skin 
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 HP:0000977 Soft skin 
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 HP:0000978 Ecchymoses 
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 HP:0000987 Scarring 
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 HP:0000993 Molluscoid pseudotumors 
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 HP:0001131 Corneal dystrophy 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001519 Dolichostenomelia "A tall and slim body build with increased arm span to height ratio (>1.05) and a reduced upper-to-lower segment ratio (<0.85), i.e., unusually long arms and legs. The extremities as well as the hands and feet are unusually slim." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001788 Premature rupture of membranes "Premature rupture of membranes (PROM) is a condition which occurs in pregnancy when the amniotic sac ruptures more than an hour before the onset of labor." [HPO:probinson]
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 HP:0001933 Subcutaneous hemorrhage 
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 HP:0001939 Metabolism abnormality 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002647 Aortic dissection "Aortic dissection refers to a tear in the intimal layer of the aorta causing a separation between the intima and the medial layers of the aorta." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002761 Generalized joint laxity "Joint hypermobility (ability of a joint to move beyond its normal range of motion) affecting many or all joints of the body." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005294 Arterial dissection 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005952 Decreased pulmonary function 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0007517 Cutis laxa, hands and feet 
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 HP:0008458 Congenital scoliosis, progressive 
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 HP:0010727 Spontaneous rupture of the globe "Rupture of the eyeball not due to trauma." [HPO:probinson]
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 HP:0025019 Arterial rupture "Sudden breakage of an artery leading to leakage of blood from the circulation." [] {comment="HPO:probinson"}
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000106397 PLOD3 / O60568 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 3  / reaction
 ENSG00000083444 PLOD1 / Q02809 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 1  / reaction / complex
 ENSG00000152952 PLOD2 / O00469 / procollagen-lysine,2-oxoglutarate 5-dioxygenase 2  / reaction






 

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