ENSGALG00000007048


Gallus gallus

Features
Gene ID: ENSGALG00000007048
  
Biological name :SYNM
  
Synonyms : synemin / SYNM
  
Possible biological names infered from orthology : O15061 / Q70IV5 / synemin, intermediate filament protein
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 16877090
Gene end: 16897766
  
Corresponding Affymetrix probe sets: Gga.4306.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000033263
Ensembl peptide - ENSGALP00000061573
NCBI entrez gene - 395599     See in Manteia.
RefSeq - NM_204809
RefSeq Peptide - NP_990140
swissprot - F1NJM8
Ensembl - ENSGALG00000007048
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synmENSDARG00000062350Danio rerio
 SYNMENSG00000182253Homo sapiens
 SynmENSMUSG00000030554Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NES / nestin ENSGALG0000001323914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0031443 fast-twitch skeletal muscle fiber contraction IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043034 costamere IEA
 cellular_componentGO:0060053 neurofilament cytoskeleton IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0008307 structural constituent of muscle IEA
 molecular_functionGO:0017166 vinculin binding IEA
 molecular_functionGO:0019215 intermediate filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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