ENSG00000182253


Homo sapiens

Features
Gene ID: ENSG00000182253
  
Biological name :SYNM
  
Synonyms : O15061 / synemin / SYNM
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q26.3
Gene start: 99098217
Gene end: 99135593
  
Corresponding Affymetrix probe sets: 212730_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000330469
Ensembl peptide - ENSP00000472953
Ensembl peptide - ENSP00000453040
Ensembl peptide - ENSP00000336775
NCBI entrez gene - 23336     See in Manteia.
OMIM - 606087
RefSeq - XM_017022035
RefSeq - NM_015286
RefSeq - NM_145728
RefSeq Peptide - NP_056101
RefSeq Peptide - NP_663780
swissprot - O15061
swissprot - C9JIE4
swissprot - A0A075B7B1
swissprot - H0YL34
Ensembl - ENSG00000182253
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synmENSDARG00000062350Danio rerio
 SYNMENSGALG00000007048Gallus gallus
 SynmENSMUSG00000030554Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NES / nestin / P48681ENSG0000013268817


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR018039  Intermediate filament protein, conserved site
 IPR030634  Synemin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031443 fast-twitch skeletal muscle fiber contraction IEA
 biological_processGO:0045104 intermediate filament cytoskeleton organization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005882 intermediate filament IEA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0043034 costamere IDA
 cellular_componentGO:0060053 neurofilament cytoskeleton TAS
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008307 structural constituent of muscle IEA
 molecular_functionGO:0017166 vinculin binding IDA
 molecular_functionGO:0019215 intermediate filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr