ENSGALG00000008038


Gallus gallus

Features
Gene ID: ENSGALG00000008038
  
Biological name :SF3B1
  
Synonyms : SF3B1 / splicing factor 3b subunit 1
  
Possible biological names infered from orthology : O75533
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 10202758
Gene end: 10219018
  
Corresponding Affymetrix probe sets: Gga.19218.1.S1_at (Chicken Array)   Gga.9919.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013029
NCBI entrez gene - 424056     See in Manteia.
RefSeq - XM_015289491
RefSeq - XM_421912
swissprot - E1C2C3
Ensembl - ENSGALG00000008038
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b1ENSDARG00000056138Danio rerio
 SF3B1ENSG00000115524Homo sapiens
 Sf3b1ENSMUSG00000025982Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR015016  Splicing factor 3B subunit 1
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005686 U2 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0034693 U11/U12 snRNP IEA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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