ENSGALG00000008403


Gallus gallus

Features
Gene ID: ENSGALG00000008403
  
Biological name :PHF21A
  
Synonyms : PHD finger protein 21A / PHF21A
  
Possible biological names infered from orthology : PHD finger protein 21A isoform 4 / Q96BD5
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 23771783
Gene end: 23893510
  
Corresponding Affymetrix probe sets: Gga.11638.1.S1_s_at (Chicken Array)   GgaAffx.22563.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013674
Ensembl peptide - ENSGALP00000029877
NCBI entrez gene - 423199     See in Manteia.
RefSeq - XM_015287056
RefSeq - XM_015287052
RefSeq - XM_015287053
RefSeq - XM_015287055
RefSeq - NM_001199647
RefSeq - XM_015287050
RefSeq - XM_015287051
RefSeq Peptide - NP_001186576
swissprot - F1P5P6
swissprot - F1NP02
Ensembl - ENSGALG00000008403
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf21abENSDARG00000021378Danio rerio
 PHF21AENSG00000135365Homo sapiens
 Phf21aENSMUSG00000058318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHF21B / PHD finger protein 21B / Q8C966* / Q96EK2*ENSGALG0000001421823


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:1990391 DNA repair complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0042393 histone binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr