ENSMUSG00000058318


Mus musculus

Features
Gene ID: ENSMUSG00000058318
  
Biological name :Phf21a
  
Synonyms : PHD finger protein 21A isoform 4 / Phf21a
  
Possible biological names infered from orthology : PHD finger protein 21A / Q96BD5
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: E1
Gene start: 92093117
Gene end: 92364666
  
Corresponding Affymetrix probe sets: 10474006 (MoGene1.0st)   1418390_at (Mouse Genome 430 2.0 Array)   1418391_at (Mouse Genome 430 2.0 Array)   1435619_at (Mouse Genome 430 2.0 Array)   1441145_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000106925
Ensembl peptide - ENSMUSP00000106924
Ensembl peptide - ENSMUSP00000106928
Ensembl peptide - ENSMUSP00000125734
Ensembl peptide - ENSMUSP00000125628
Ensembl peptide - ENSMUSP00000125228
Ensembl peptide - ENSMUSP00000124845
Ensembl peptide - ENSMUSP00000124255
Ensembl peptide - ENSMUSP00000124238
Ensembl peptide - ENSMUSP00000124224
Ensembl peptide - ENSMUSP00000124032
Ensembl peptide - ENSMUSP00000123955
Ensembl peptide - ENSMUSP00000038497
Ensembl peptide - ENSMUSP00000070649
Ensembl peptide - ENSMUSP00000088074
Ensembl peptide - ENSMUSP00000106921
Ensembl peptide - ENSMUSP00000106922
Ensembl peptide - ENSMUSP00000106923
NCBI entrez gene - 192285     See in Manteia.
MGI - MGI:2384756
RefSeq - XM_017316548
RefSeq - XM_011239365
RefSeq - XM_011239366
RefSeq - XM_011239367
RefSeq - XM_011239368
RefSeq - XM_011239369
RefSeq - XM_011239370
RefSeq - XM_011239371
RefSeq - XM_011239372
RefSeq - XM_011239373
RefSeq - XM_011239374
RefSeq - XM_011239376
RefSeq - XM_011239377
RefSeq - XM_011239378
RefSeq - XM_017316527
RefSeq - XM_017316529
RefSeq - XM_017316533
RefSeq - XM_017316535
RefSeq - XM_017316536
RefSeq - XM_017316543
RefSeq - NM_001109690
RefSeq - NM_001109691
RefSeq - NM_138755
RefSeq - XM_006498959
RefSeq - XM_006498960
RefSeq - XM_006498964
RefSeq - XM_006498967
RefSeq - XM_006498970
RefSeq - XM_006498971
RefSeq - XM_006498972
RefSeq - XM_006498974
RefSeq - XM_006498975
RefSeq - XM_006498977
RefSeq - XM_006498980
RefSeq - XM_011239361
RefSeq - XM_011239362
RefSeq - XM_011239363
RefSeq - XM_011239364
RefSeq Peptide - NP_620094
RefSeq Peptide - NP_001333633
RefSeq Peptide - NP_001103160
RefSeq Peptide - NP_001103161
swissprot - E0CYN5
swissprot - D3Z764
swissprot - A2AHG4
swissprot - A2AHG3
swissprot - A2AHG2
swissprot - E9QKW9
swissprot - F6TL54
swissprot - F6U6L3
swissprot - F6URE6
swissprot - A0A1C7ZN08
swissprot - A0A1C7ZN07
swissprot - F6TKP4
swissprot - E9PV92
swissprot - E0CZ79
swissprot - E0CZ36
Ensembl - ENSMUSG00000058318
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf21abENSDARG00000021378Danio rerio
 PHF21AENSGALG00000008403Gallus gallus
 PHF21AENSG00000135365Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Phf21b / Q8C966 / PHD finger protein 21B / Q96EK2*ENSMUSG0000001662425


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000118 histone deacetylase complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:1990391 DNA repair complex IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
HDACs deacetylate histones
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001436 abnormal suckling behavior "reduced ability or inability to exert suction by the mouth, or atypical suckling pattern" [J:16461]
Show

Allelic Composition: Kat6atm1Avo/Kat6a+
Genetic Background: involves: 129 * BALB/c * FVB/N

 MP:0011087 complete neonatal lethality "death of all organisms of a given genotype in a population within the neonatal period after birth (Mus: P0)" [MGI:csmith]
Show

Allelic Composition: Kat6atm1Avo/Kat6a+
Genetic Background: involves: 129 * BALB/c * FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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