ENSGALG00000008765


Gallus gallus

Features
Gene ID: ENSGALG00000008765
  
Biological name :C1D
  
Synonyms : C1D / C1D nuclear receptor corepressor
  
Possible biological names infered from orthology : Mus musculus C1D nuclear receptor co-repressor (C1d), transcript variant 2, mRNA. / O35473 / Q13901
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 11233265
Gene end: 11246857
  
Corresponding Affymetrix probe sets: Gga.5517.1.S1_s_at (Chicken Array)   GgaAffx.13164.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014242
Ensembl peptide - ENSGALP00000042966
Ensembl peptide - ENSGALP00000060699
Ensembl peptide - ENSGALP00000061672
NCBI entrez gene - 421267     See in Manteia.
RefSeq - XM_015278043
RefSeq - NM_001031036
RefSeq - NM_001244737
RefSeq Peptide - NP_001026207
RefSeq Peptide - NP_001231666
swissprot - R4GL93
swissprot - F1NRP5
Ensembl - ENSGALG00000008765
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 c1dENSDARG00000021112Danio rerio
 C1DENSG00000197223Homo sapiens
 C1dENSMUSG00000000581Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007146  Sas10/Utp3/C1D
 IPR011082  Exosome-associated factor Rrp47/DNA strand repair C1D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0016922 nuclear receptor binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003086 EXOSC10 / exosome component 10 / P56960* / Q01780* / Mus musculus exosome component 10 (Exosc10), transcript variant 5, mRNA.*  / complex
 ENSGALG00000031983 MPHOSPH6 / M-phase phosphoprotein 6 / Q99547* / Q9D1Q1* / Mus musculus M phase phosphoprotein 6 (Mphosph6), transcript variant 3, mRNA.*  / complex






 

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contact: otassy@igbmc.fr