ENSG00000197223


Homo sapiens

Features
Gene ID: ENSG00000197223
  
Biological name :C1D
  
Synonyms : C1D / C1D nuclear receptor corepressor / Q13901
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p14
Gene start: 68041130
Gene end: 68110948
  
Corresponding Affymetrix probe sets: 200056_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000348107
Ensembl peptide - ENSP00000384304
Ensembl peptide - ENSP00000386468
Ensembl peptide - ENSP00000386779
NCBI entrez gene - 10438     See in Manteia.
OMIM - 606997
RefSeq - NM_001190265
RefSeq - NM_001190263
RefSeq - NM_006333
RefSeq - NM_173177
RefSeq Peptide - NP_001177192
RefSeq Peptide - NP_001177194
RefSeq Peptide - NP_006324
RefSeq Peptide - NP_775269
swissprot - Q13901
swissprot - J3KPZ4
Ensembl - ENSG00000197223
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 c1dENSDARG00000021112Danio rerio
 C1DENSGALG00000008765Gallus gallus
 C1dENSMUSG00000000581Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007146  Sas10/Utp3/C1D
 IPR011082  Exosome-associated factor Rrp47/DNA strand repair C1D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000176 nuclear exosome (RNase complex) TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016922 nuclear receptor binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000039123 MTREX / P42285 / Mtr4 exosome RNA helicase  / complex
 ENSG00000171824 Q01780 / EXOSC10 / exosome component 10  / complex
 ENSG00000135698 Q99547 / MPHOSPH6 / M-phase phosphoprotein 6  / complex






 

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