ENSGALG00000009261


Gallus gallus

Features
Gene ID: ENSGALG00000009261
  
Biological name :VAX1
  
Synonyms : VAX1 / ventral anterior homeobox 1
  
Possible biological names infered from orthology : Q2NKI2 / Q5SQQ9
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 29106869
Gene end: 29110323
  
Corresponding Affymetrix probe sets: Gga.321.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015056
NCBI entrez gene - 395582     See in Manteia.
RefSeq - NM_204799
RefSeq Peptide - NP_990130
swissprot - F1P5G0
Ensembl - ENSGALG00000009261
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vax1ENSDARG00000021916Danio rerio
 VAX1ENSG00000148704Homo sapiens
 Vax1ENSMUSG00000006270Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EMX1 / empty spiracles homeobox 1 / Q04741* / Q04742* / Homeobox protein EMX1 *ENSGALG0000003051616
NOTO / A8MTQ0* / Q5TIS6* / notochord homeobox* / Homeobox protein notochord *ENSGALG0000003598115
EN1 / engrailed homeobox 1 / P09065* / Q05925* / Homeobox protein engrailed-1 *ENSGALG0000004238915
GNOT2 / Gallus gallus Gnot2 homeodomain protein (GNOT2), mRNA. / NOTO* / A8MTQ0* / Q5TIS6* / notochord homeobox* / Homeobox protein notochord *ENSGALG0000001058814
EMX2 / empty spiracles homeobox 2 / Q04743* / Q04744* / Homeobox protein EMX2 *ENSGALG0000000930214
ENSGALG000000412954


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR033020  Ventral anterior homeobox 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007406 negative regulation of neuroblast proliferation IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0060021 roof of mouth development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001162 RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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