ENSGALG00000030516


Gallus gallus

Features
Gene ID: ENSGALG00000030516
  
Biological name :EMX1
  
Synonyms : empty spiracles homeobox 1 / EMX1
  
Possible biological names infered from orthology : Homeobox protein EMX1 / Q04741 / Q04742
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 90426918
Gene end: 90434440
  
Corresponding Affymetrix probe sets: GgaAffx.10265.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052472
NCBI entrez gene - 768977     See in Manteia.
RefSeq - XM_001232150
swissprot - A0A1D5PI40
Ensembl - ENSGALG00000030516
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EMX1ENSG00000135638Homo sapiens
 Emx1ENSMUSG00000033726Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EMX2 / empty spiracles homeobox 2 / Q04743* / Q04744* / Homeobox protein EMX2 *ENSGALG0000000930270
VAX1 / ventral anterior homeobox 1 / Q2NKI2* / Q5SQQ9*ENSGALG0000000926122
EN1 / engrailed homeobox 1 / P09065* / Q05925* / Homeobox protein engrailed-1 *ENSGALG0000004238920
NOTO / A8MTQ0* / Q5TIS6* / notochord homeobox* / Homeobox protein notochord *ENSGALG0000003598120
GNOT2 / Gallus gallus Gnot2 homeodomain protein (GNOT2), mRNA. / NOTO* / A8MTQ0* / Q5TIS6* / notochord homeobox* / Homeobox protein notochord *ENSGALG0000001058818
ENSGALG000000412954


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0021796 cerebral cortex regionalization IEA
 biological_processGO:0021895 cerebral cortex neuron differentiation IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0048854 brain morphogenesis IEA
 biological_processGO:0048872 homeostasis of number of cells IEA
 biological_processGO:0060019 radial glial cell differentiation IEA
 biological_processGO:0060563 neuroepithelial cell differentiation IEA
 biological_processGO:0070445 regulation of oligodendrocyte progenitor proliferation IEA
 biological_processGO:1990138 neuron projection extension IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr