ENSGALG00000009500


Gallus gallus

Features
Gene ID: ENSGALG00000009500
  
Biological name :VPS50
  
Synonyms : Q5ZKV9 / Syndetin / VPS50
  
Possible biological names infered from orthology : Q8CI71 / Q96JG6 / VPS50, EARP/GARPII complex subunit
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 22978146
Gene end: 23047300
  
Corresponding Affymetrix probe sets: GgaAffx.21703.1.S1_s_at (Chicken Array)   GgaAffx.5981.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015447
Ensembl peptide - ENSGALP00000037320
NCBI entrez gene - 420560     See in Manteia.
RefSeq - XM_015281394
RefSeq - NM_001012854
RefSeq Peptide - NP_001012872
swissprot - Q5ZKV9
swissprot - F1NDR7
Ensembl - ENSGALG00000009500
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps50ENSDARG00000096912Danio rerio
 vps50ENSDARG00000002880Danio rerio
 VPS50ENSG00000004766Homo sapiens
 Vps50ENSMUSG00000001376Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019514  Protein of unknown function DUF2451, C-terminal
 IPR019515  Vacuolar protein sorting-associated protein 54, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0055037 recycling endosome ISS
 cellular_componentGO:1990745 EARP complex IEA
 molecular_functionGO:0000149 SNARE binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr