ENSMUSG00000001376


Mus musculus

Features
Gene ID: ENSMUSG00000001376
  
Biological name :Vps50
  
Synonyms : Q8CI71 / Vps50 / VPS50 EARP/GARPII complex subunit
  
Possible biological names infered from orthology : Q96JG6
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: A1
Gene start: 3498382
Gene end: 3603531
  
Corresponding Affymetrix probe sets: 10536176 (MoGene1.0st)   1430035_at (Mouse Genome 430 2.0 Array)   1432094_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000001412
Ensembl peptide - ENSMUSP00000125872
Ensembl peptide - ENSMUSP00000128323
NCBI entrez gene - 73288     See in Manteia.
MGI - MGI:1920538
RefSeq - NM_001167751
RefSeq - NM_001167750
RefSeq - NM_024260
RefSeq Peptide - NP_001161222
RefSeq Peptide - NP_001161223
RefSeq Peptide - NP_077222
swissprot - Q8CI71
Ensembl - ENSMUSG00000001376
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps50ENSDARG00000096912Danio rerio
 vps50ENSDARG00000002880Danio rerio
 VPS50ENSGALG00000009500Gallus gallus
 VPS50ENSG00000004766Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019514  Protein of unknown function DUF2451, C-terminal
 IPR019515  Vacuolar protein sorting-associated protein 54, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling ISO
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0055037 recycling endosome ISS
 cellular_componentGO:1990745 EARP complex ISO
 molecular_functionGO:0000149 SNARE binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr