ENSGALG00000010179


Gallus gallus

Features
Gene ID: ENSGALG00000010179
  
Biological name :RFX3
  
Synonyms : regulatory factor X3 / RFX3
  
Possible biological names infered from orthology : P48380 / P48381 / Transcription factor RFX3
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 26672763
Gene end: 26773738
  
Corresponding Affymetrix probe sets: Gga.15773.1.S1_at (Chicken Array)   GgaAffx.23154.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016529
NCBI entrez gene - 427351     See in Manteia.
RefSeq - XM_003642990
RefSeq - XM_004949060
RefSeq - XM_015280206
swissprot - F1NC32
Ensembl - ENSGALG00000010179
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfx3ENSDARG00000014550Danio rerio
 RFX3ENSG00000080298Homo sapiens
 Rfx3ENSMUSG00000040929Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RFX2 / regulatory factor X2 / P48378* / P48379* / DNA-binding protein RFX2 *ENSGALG0000000177366
RFX4 / regulatory factor X4 / Q33E94* / Q7TNK1* / Transcription factor RFX4 *ENSGALG0000001264725
RFX6 / regulatory factor X6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSGALG0000001491823
RFX8 / RFX family member 8, lacking RFX DNA binding domain / D3YU81* / Q6ZV50* / DNA-binding protein RFX8 *ENSGALG0000004538817
RFX7 / regulatory factor X7 / Q2KHR2*ENSGALG0000004189610
RFX5 / regulatory factor X5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSGALG000000008368


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR007668  RFX1 transcription activation region
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0031018 endocrine pancreas development IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0050796 regulation of insulin secretion IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0060285 cilium-dependent cell motility IEA
 biological_processGO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IEA
 biological_processGO:0072560 type B pancreatic cell maturation IEA
 biological_processGO:2000078 positive regulation of type B pancreatic cell development IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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