ENSDARG00000014550


Danio rerio

Features
Gene ID: ENSDARG00000014550
  
Biological name :rfx3
  
Synonyms : regulatory factor X, 3 (influences HLA class II expression) / rfx3
  
Possible biological names infered from orthology : P48380 / P48381 / regulatory factor X3 / Transcription factor RFX3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 600164
Gene end: 641609
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000041235
Ensembl peptide - ENSDARP00000137734
NCBI entrez gene - 570989     See in Manteia.
RefSeq - NM_001080048
RefSeq Peptide - NP_001073517
swissprot - F1QI01
swissprot - A0A0R4INV3
ZFIN ID - ZDB-GENE-061103-253
Ensembl - ENSDARG00000014550
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RFX3ENSGALG00000010179Gallus gallus
 RFX3ENSG00000080298Homo sapiens
 Rfx3ENSMUSG00000040929Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rfx2 / Q5EAP5 / regulatory factor X, 2 (influences HLA class II expression) / P48379* / P48378* / regulatory factor X2* / DNA-binding protein RFX2 *ENSDARG0000001357562
rfx1a / regulatory factor X, 1a (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000000588353
rfx1b / regulatory factor X, 1b (influences HLA class II expression) / RFX1* / P22670* / P48377* / regulatory factor X1* / MHC class II regulatory factor RFX1 *ENSDARG0000007590450
rfx6 / Q5RJA1 / regulatory factor X, 6 / Q8C7R7* / Q8HWS3* / DNA-binding protein RFX6 *ENSDARG0000004170224
rfx4 / A2BGA0 / regulatory factor X, 4 / Q7TNK1* / Q33E94* / Transcription factor RFX4 *ENSDARG0000002639523
rfx7b / regulatory factor X7b / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000010369114
rfx7a / regulatory factor X7a / RFX7* / Q2KHR2* / regulatory factor X7*ENSDARG0000007723713
rfx5 / regulatory factor X, 5 / P48382* / Q9JL61* / Mus musculus regulatory factor X, 5 (influences HLA class II expression) (Rfx5), transcript variant 2, mRNA.*ENSDARG000000632589


Protein motifs (from Interpro)
Interpro ID Name
 IPR003150  DNA-binding RFX-type winged-helix domain
 IPR007668  RFX1 transcription activation region
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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